BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZC01RM1.SCF screened BAC_end
(855 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig868 1572 0.0
>3x_Contig868
Length = 3693
Score = 1572 bits (793), Expect = 0.0
Identities = 809/813 (99%), Gaps = 1/813 (0%)
Strand = Plus / Plus
Query: 43 agctttattcttgtgtaatctatttatctgatcttaacttttaaatatccattcgcttct 102
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 2616 agctttattcttgtgtaatcgacctatctgatcttaacttttaaatatccattcgcttct 2675
Query: 103 ggattttcattttttgatctttttcatatatagatttgttactgacaaccgaagtgcaga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2676 ggattttcattttttgatctttttcatatatagatttgttactgacaaccgaagtgcaga 2735
Query: 163 tgtaagtcatatctgaactggaatagtattacgtggaaaattatggcaaataccgatact 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2736 tgtaagtcatatctgaactggaatagtattacgtggaaaattatggcaaataccgatact 2795
Query: 223 gacggagggaaaacacgatagaaaattgacctcattagatcaattctaacttgggcacca 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2796 gacggagggaaaacacgatagaaaattgacctcattagatcaattctaacttgggcacca 2855
Query: 283 atctgtatattcagcatcatattaaccgtcggatgaatgacatataacagtgattaggtg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2856 atctgtatattcagcatcatattaaccgtcggatgaatgacatataacagtgattaggtg 2915
Query: 343 agtgacgataaaacctgtagcaaatgcggaagagtacttctaagtgtaaatatattataa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2916 agtgacgataaaacctgtagcaaatgcggaagagtacttctaagtgtaaatatattataa 2975
Query: 403 tacagtaaataataaaagatcatctgtttttgttttctggctaaaattcggttgcattct 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2976 tacagtaaataataaaagatcatctgtttttgttttctggctaaaattcggttgcattct 3035
Query: 463 caatggttatgtctcttgcatactgagaacctcctctagtgtccttcgcagctgcagtat 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3036 caatggttatgtctcttgcatactgagaacctcctctagtgtccttcgcagctgcagtat 3095
Query: 523 cttcttcggcgtcacctttgtcctccgcatcgcgaggaacgtgattgagttgaacgcttg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3096 cttcttcggcgtcacctttgtcctccgcatcgcgaggaacgtgattgagttgaacgcttg 3155
Query: 583 gggcatatttagtatgctctagattgctgaaaatattaagtagcactttatccaaatact 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3156 gggcatatttagtatgctctagattgctgaaaatattaagtagcactttatccaaatact 3215
Query: 643 ccggtgtattgacgttatacatattagatggtctgacatccaatttgtaatcagggccat 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3216 ccggtgtattgacgttatacatattagatggtctgacatccaatttgtaatcagggccat 3275
Query: 703 aatattcgtagtaatcgttgtaaggaagttcttcatccaaaatcacattattcagaatac 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3276 aatattcgtagtaatcgttgtaaggaagttcttcatccaaaatcacattattcagaatac 3335
Query: 763 ccgtttcgaaagcccatgtacgagccacgtttcgcattgtataaccaccaccaccaacaa 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3336 ccgtttcgaaagcccatgtacgagccacgtttcgcattgtataaccaccaccaccaacaa 3395
Query: 823 tcatgaggaggaacaccgaacgatttcatgtag 855
|||||| ||||||||||||||||||||||||||
Sbjct: 3396 tcatga-gaggaacaccgaacgatttcatgtag 3427
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6777
Number of Sequences: 1807
Number of extensions: 6777
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 855
length of database: 10,358,551
effective HSP length: 16
effective length of query: 839
effective length of database: 10,329,639
effective search space: 8666567121
effective search space used: 8666567121
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)