BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZC03FM1.SCF screened BAC_end
(985 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1548 1653 0.0
>3x_Contig1548
Length = 9830
Score = 1653 bits (834), Expect = 0.0
Identities = 885/899 (98%), Gaps = 3/899 (0%)
Strand = Plus / Plus
Query: 84 agtgatgctttgttatcggccggtgttgatataagagaggaagaggcattgctaagtagc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5486 agtgatgctttgttatcggccggtgttgatataagagaggaagaggcattgctaagtagc 5545
Query: 144 acagttgctagaacaaaagcaaccggtatttcagcaaataaccaggtcccatctcatcct 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5546 acagttgctagaacaaaagcaaccggtatttcagcaaataaccaggtcccatctcatcct 5605
Query: 204 ccattcctacatcctattatcatttcagatttcatgaaaagaattgcatcagaacaaaac 263
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5606 ccattcctacatcctaagaacatttcagatttcatgaaaagaattgcatcagaacaaaac 5665
Query: 264 tttcatcaagatttcaataaaaacactgatatactcggattaatgtctactgcatgtgaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5666 tttcatcaagatttcaataaaaacactgatatactcggattaatgtctactgcatgtgaa 5725
Query: 324 ctttacatgagggacgtgataacgaactctttaatcctatccatacatagacggaaaggt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5726 ctttacatgagggacgtgataacgaactctttaatcctatccatacatagacggaaaggt 5785
Query: 384 gttaaactaaacacgggaaggaggagtgaagtgagtcgttctttgagggatttagcatta 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5786 gttaaactaaacacgggaaggaggagtgaagtgagtcgttctttgagggatttagcatta 5845
Query: 444 agacaaaagactcaagaagaaagaagagtacagagaagaatagcactcggtttagaaaaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5846 agacaaaagactcaagaagaaagaagagtacagagaagaatagcactcggtttagaaaaa 5905
Query: 504 caaacaacggatgctaggttagatactgaagagactcaatatcgtgcatcaaatgcaact 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5906 caaacaacggatgctaggttagatactgaagagactcaatatcgtgcatcaaatgcaact 5965
Query: 564 gccaatttgatgattgcagggggtaacaaaaaaaaatatagttggttgaccgctggatcc 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5966 gccaatttgatgattgcagggggtaacaaaaaaaaatatagttggttgaccgctggatcc 6025
Query: 624 aagtccagctcgacagacctaaaaaatcagggaaatgtttcatctgctgttgcagcaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6026 aagtccagctcgacagacctaaaaaatcagggaaatgtttcatctgctgttgcagcaagg 6085
Query: 684 ggtgaaatgggtatcaaatatagagaagcaagagaagaacctggcatcgttatgagggac 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6086 ggtgaaatgggtatcaaatatagagaagcaagagaagaacctggcatcgttatgagggac 6145
Query: 744 cttcttttagctntagaaaataggcgagtaggagttaataatgttatcactaaaggatat 803
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6146 cttcttttagctttagaaaataggcgagtaggagttaataatgttatcactaaaggatat 6205
Query: 804 gctagaatcagagactagcatttncagttactttgaggaataatatgagtttccgagaat 863
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6206 gctagaatcagagactagcatttccagttactttgaggaataatatgagtttccgagatg 6265
Query: 864 gtctgtagtatgcatactt-tatatatataaacctttcgataaat-acatagagactcat 921
|||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct: 6266 ttctgtagtatgcatacttatata-atataaacctttcgataaataacatagagactcat 6324
Query: 922 acttgcatgcgagaatactttttcttttctacctgncatgtcgcatatttaatatttaa 980
|||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 6325 acttgcatgcgagattacttttccttttctacctgacatgtcgcatatttaatatttaa 6383
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8394
Number of Sequences: 1807
Number of extensions: 8394
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)