BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZC03RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1571 1618 0.0
>3x_Contig1571
Length = 13536
Score = 1618 bits (816), Expect = 0.0
Identities = 886/906 (97%), Gaps = 3/906 (0%)
Strand = Plus / Plus
Query: 43 cttgaggtggaaagagagcgagggtttacaatcaaagcacagacatgctccatgttttac 102
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 639 cttgaggtggaaagagagcgagggattacaatcaaagcacagacatgctccatgttttac 698
Query: 103 caggatcctagaacgaaattggactatctcttacatttagtggatacaccgggccatgtg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 caggatcctagaacgaaattggactatctcttacatttagtggatacaccgggccatgtg 758
Query: 163 gattttcttgctgaagtttcaagatcgtatgcatcgtgtggtggcgctttgttatttgtt 222
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 759 gattttcgtgctgaagtttcaagatcgtatgcatcgtgtggtggcgctttgttactcgtt 818
Query: 223 gacgcttcccaaggtgttcaagcacagacagtcgcaaacttttacctcgcttatagtatg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 gacgcttcccaaggtgttcaagcacagacagtcgcaaacttttacctcgcttatagtatg 878
Query: 283 gatttgaaacttattcctgtcataaacaagattgacttggacattgctgacattgaccaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gatttgaaacttattcctgtcataaacaagattgacttggacattgctgacattgaccaa 938
Query: 343 gcagaagaacaggttgaaaatatgttcgagctacctaagtcagattgtatcaaagttagt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 gcagaagaacaggttgaaaatatgttcgagctacctaagtcagattgtatcaaagttagt 998
Query: 403 gctaaaactggattgcacgtcgagcaattgttacccgctattgttgatagaatacctcct 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 gctaaaactggattgcacgtcgagcaattgttacccgctattgttgatagaatacctcct 1058
Query: 463 ccgaccggtaaagttgagaaaccattacgtgcattattggtggattcgtggtatgactct 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 ccgaccggtaaagttgagaaaccattacgtgcattattggtggattcgtggtatgactct 1118
Query: 523 tatttaggagtggtgcttcttgtacatatagttgatggtcaagtgaaaagaggagataaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 tatttaggagtggtgcttcttgtacatatagttgatggtcaagtgaaaagaggagataaa 1178
Query: 583 atcatcactgccgcaaatggattgaagtatgaagtgagggaatgcggtataatgtaccca 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 atcatcactgccgcaaatggattgaagtatgaagtgagggaatgcggtataatgtaccca 1238
Query: 643 gatcgtgtcgctactaacacactgaaatcaggtcaagtcgggtatttggtacctggcatg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 gatcgtgtcgctactaacacactgaaatcaggtcaagtcgggtatttggtacctggcatg 1298
Query: 703 aaagaatctaaggatgccaagattggtgatactttgatgcatctcggtaaagaatcgatt 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 aaagaatctaaggatgccaagattggtgatactttgatgcatctcggtaaagaatcgatt 1358
Query: 763 actgaagtgttaccagaatttgaagaaccaaaacccattggtcttcgtangagcttttcc 822
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct: 1359 actgaagtgttaccaggatttgaagaaccaaaaccca-tggtcttcgtaggagctttccc 1417
Query: 823 tgctgatggggccgaatttaaagcgttagacgatgatattagtagactcgtcntaaatga 882
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1418 tgctgatggggccgaattcaaagcgttagacgatgatattagtagactcgtcttaaatga 1477
Query: 883 tagatcagtgttccttcaaagataacggtc-aatgcactaggcccaagttgggagattag 941
||||||||||| ||| |||||| || ||| ||||||||||| ||||| | |||||||||
Sbjct: 1478 tagatcagtgtccctccaaagagaaacgtcaaatgcactagg-ccaaggttggagattag 1536
Query: 942 aatttt 947
|||||
Sbjct: 1537 gatttt 1542
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5940
Number of Sequences: 1807
Number of extensions: 5940
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)