BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZC04FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1484 1580 0.0
>3x_Contig1484
Length = 9345
Score = 1580 bits (797), Expect = 0.0
Identities = 853/870 (98%), Gaps = 2/870 (0%)
Strand = Plus / Plus
Query: 85 agctgccatacaaaaaaatttcatttttttgttctttccattttactaactaacaattgc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2979 agctgccatacaaaaaaatttcatttttttgttctttccattttactaactaacaattgc 3038
Query: 145 atcaatatagtacctctgctactcaagctgacgtctctgctttcaaggctttccaatcta 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3039 atcaatatagtacctctgctactcaagctgacgtctctgctttcaaggctttccaatcta 3098
Query: 205 cttacccagaattctttatatggttcaaccacattgcttccaaggctgatcaattcgaat 264
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3099 cttacccagaattctctagatggttcaaccacattgcttccaaggctgatcaattcgaat 3158
Query: 265 ccttgccagctgctacttctacaccagctgctgctgaagaagaagatgacgatgacgaag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3159 ccttgccagctgctacttctacaccagctgctgctgaagaagaagatgacgatgacgaag 3218
Query: 325 tcgatttgttcggttctgacgatgatgtcgatgaagaagctgaacaattgaaggctaaga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3219 tcgatttgttcggttctgacgatgatgtcgatgaagaagctgaacaattgaaggctaaga 3278
Query: 385 gaatcgctgaatacaacgaaaagaaggctgctaagccaaaggctgctgctaagtctatcg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3279 gaatcgctgaatacaacgaaaagaaggctgctaagccaaaggctgctgctaagtctatcg 3338
Query: 445 ttaccttggatgttaagccatgggatgacgaaaccgatttggaagaattggttgccaacg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3339 ttaccttggatgttaagccatgggatgacgaaaccgatttggaagaattggttgccaacg 3398
Query: 505 ttaagaacatcgaaatggatggtttgaactggggtgctcaccaatggattccaattggtt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3399 ttaagaacatcgaaatggatggtttgaactggggtgctcaccaatggattccaattggtt 3458
Query: 565 tcggtatcaagaagttgcaaattaacatggtcatcgaagatgctaaggtttctcttgatg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3459 tcggtatcaagaagttgcaaattaacatggtcatcgaagatgctaaggtttctcttgatg 3518
Query: 625 aattgcaacaacttatcgaagaagatgaagaccacgtccaatctactgatgttgctgcta 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3519 aattgcaacaacttatcgaagaagatgaagaccacgtccaatctactgatgttgctgcta 3578
Query: 685 tgcaaaagttgtaattaaacttaattaagttcttcacctttttccccttacatanatgaa 744
||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||
Sbjct: 3579 tgcaaaagttgtaattaaactaatttaagttcttcacctttttccccttacataaatgaa 3638
Query: 745 taaataaatatactatatttctcaacgacccccttcgtgctttcttgctggacccggacc 804
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3639 taaataaatatactatatttctcaacgacccccttcgtgctttcttgctggacccgaacc 3698
Query: 805 cttgctgnctcttttatcctgntatgttcatctttctttttagtttacagcctctgagca 864
||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 3699 cttgctgtctcttttatcctgttatgttcatctttcttttaggtttacagcctctgagca 3758
Query: 865 tcttaagaatagaaa-gtgcataatattaatgcatatagataatt-atttaacatcatgc 922
||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||
Sbjct: 3759 tcttaagaatagaaatgtgcataatataaatgcatatagataattaattaaacatcatgc 3818
Query: 923 tgcatttaagggtaaatttgagaaaaaaaa 952
||||||||||| |||| ||||||||||||
Sbjct: 3819 tgcatttaaggtaaaatatgagaaaaaaaa 3848
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,229
Number of Sequences: 1807
Number of extensions: 10229
Number of successful extensions: 130
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)