BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZC05RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 1584 0.0
>3x_Contig1515
Length = 8855
Score = 1584 bits (799), Expect = 0.0
Identities = 853/865 (98%), Gaps = 5/865 (0%)
Strand = Plus / Plus
Query: 78 gaaatcataaatctttaccattggtgaattcttacgtatttgaaactatcaattcatgat 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3834 gaaatcataaatctttaccattggtgaattcttacgtatttgaaactatcaattcatgat 3893
Query: 138 ttcttatttttaataacattaattaatgtcagtaaaaaatcactgttttgaaagagaata 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 ttcttatttttaataacattaattaatgtcagtaaaaaatcactgttttgaaagagaata 3953
Query: 198 aagtgattaaacaaaaaacagccacgttcgaagcagttacaggagcagttcagtattatt 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954 aagtgattaaacaaaaaacagccacgttcgaagcagttacaggagcagttcagtattatt 4013
Query: 258 tagattattgttaactcacaatattaaaataaaagtctgaagttacaatggttgacatat 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4014 tagattattgttaactcacaatattaaaataaaagtctgaagttacaatggttgacatat 4073
Query: 318 atatatatatatacatgaaaagggttaaggaaaatatacagtgcgacaaataatttcaac 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4074 atatatatatatacatgaaaagggttaaggaaaatatacagtgcgacaaataatttcaac 4133
Query: 378 taattggaattctgatgtgaatgaatttgagcgtatttttaaacttgcacaagacaggag 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4134 taattggaattctgatgtgaatgaatttgagcgtatttttaaacttgcacaagacaggag 4193
Query: 438 taagcatcatattagaatcaaagccaatatgacaccaaaaagctgtagaaaaaatgatat 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4194 taagcatcatattagaatcaaagccaatatgacaccaaaaagctgtagaaaaaatgatat 4253
Query: 498 ggtaataattatggcagtttttttccaccaaagaatactctgtaaatcgttatcgtcagg 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4254 ggtaataattatggcagtttttttccaccaaagaatactctgtaaatcgttatcgtcagg 4313
Query: 558 ctcgtcaatcacatcgacattatcaacattctccacggtatattctgcctcggctggacc 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4314 ctcgtcaatcacatcgacattatcaacattctccacggtatattctgcctcggctggacc 4373
Query: 618 tggaaaaggttcttcctggattgaagattgatactcgtaatttttaatttgtatctcctt 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4374 tggaaaaggttcttcctggattgaagattgatactcgtaatttttaatttgtatctcctt 4433
Query: 678 ctccatcggtgtgcttagaattgattcaatttgtctatgctttttaaggcttatgcagaa 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4434 ctccatcggtgtgcttagaattgattcaatttgtctatgctttttaaggcttatgcagaa 4493
Query: 738 actttactaagtctcaaaagaagtaacctcgaactgcatacgtcttttatattgaacaca 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4494 actttactaagtctcaaaagaagtaacctcgaactgcatacgtcttttatattgaacaca 4553
Query: 798 attatacaatgttctcaaggatattttcaaaaccatcatattctcttgaagagcanaata 857
||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct: 4554 attatacaatg-tctcaaggataatttcaaaaccatcatagtctcttgaagagcaaaata 4612
Query: 858 tcattcctagagggggaagttgtggttaaaagttatgctcgttgggtaattctgtcattt 917
||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||||| ||
Sbjct: 4613 tca-tcctaggaggggaagttgtggtt-aaagttatgctcgtt-ggtaattctgtca-tt 4668
Query: 918 ttttttatnaaacggaattaaagac 942
||||||| ||||||||||||||||
Sbjct: 4669 ttttttaagaaacggaattaaagac 4693
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,568
Number of Sequences: 1807
Number of extensions: 13568
Number of successful extensions: 1464
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)