BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZC06RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1113 916 0.0
3x_Contig1371 355 1e-97
>3x_Contig1113
Length = 4340
Score = 916 bits (462), Expect = 0.0
Identities = 519/533 (97%), Gaps = 4/533 (0%)
Strand = Plus / Plus
Query: 402 tttctttactgaatgcgatgttatttgtaatgccaagtcgttttatatgactgcattttt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 tttctttactgaatgcgatgttatttgtaatgccaagtcgttttatatgactgcattttt 82
Query: 462 g-gtaaactaattcccaccgtcagtctaactccagtaaataaacactttctcacttatag 520
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 gcgtaaactaattcccaccgtcagtctaactccagtaaataaacactttctcacttatag 142
Query: 521 atactttctcatagatcaacttcctatactattaggctgtaatgtcgccataaacgccta 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 atactttctcatagatcaacttcctatactattaggctgtaatgtcgccataaacgccta 202
Query: 581 agacgaatgttgctcatacggctgttagatatcccacctatatcacgtgatagacatgct 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 agacgaatgttgctcatacggctgttagatatcccacctatatcacgtgatagacatgct 262
Query: 641 ttatttagttggtgttgaaaatccttcgaaagatagaaaaaaaaattcaatcaacattaa 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttatttagttggtgttgaaaatccttcgaaagatagaaaaaaaaattcaatcaacattaa 322
Query: 701 tagcgtaataacaggacaaacatattatgtatcaagacgaccagagcgagtaaaccaagt 760
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagcgtaataacaggacaaacatattatgtatcaagacgaccagagcgagtaaaccaagt 382
Query: 761 ctctttaaccagaatttaacgccaagtttgggtgaaatacaataatcatgacgaaaggtt 820
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 383 ctcttaaaccagaatttaacgccaagttt-ggtgaaatacaataatcatgacgaaagg-t 440
Query: 821 ttggtgaggataagactagctttattcggaaggaaacataccccagtatacaacatagtt 880
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggtgaggataagactagctagattcggaaggaaacataccccagtatacaacatagtt 500
Query: 881 gttaccaacaaacttaa-gcgttgaatttgtaaccaattgaagttttangaac 932
||||||||||||| ||| ||||||||| | ||||||||||||| ||| ||||
Sbjct: 501 gttaccaacaaacataaggcgttgaataggaaaccaattgaagtattaggaac 553
>3x_Contig1371
Length = 6052
Score = 355 bits (179), Expect = 1e-97
Identities = 201/207 (97%), Gaps = 1/207 (0%)
Strand = Plus / Plus
Query: 66 acgcttgttcaggacccatattgcacaatttgttcgcttgtcagttttcaatcccaagtt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5846 acgcttgttcaggacccatattgcacaatttgttcgcttgtcagttttcaatcccaagtt 5905
Query: 126 aaactcagtaattctcttttctgaggtgttgttgattataactcgtctctacttgttaga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5906 aaactcagtaattctcttttctgaggtgttgttgattataactcgtctctacttgttaga 5965
Query: 186 tgagatgagcgatgagatgagctagatt-ttttttttatacagcttgtgaaaaatttctt 244
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5966 tgagatgagcgatgagatgagctagattgaaaattttatacagcttgtgaaaaatttctt 6025
Query: 245 tttaagcccttattgatgaagcagcaa 271
|||||||||||| ||||||||||||||
Sbjct: 6026 tttaagcccttagtgatgaagcagcaa 6052
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,361
Number of Sequences: 1807
Number of extensions: 10361
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 2
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)