BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZC07FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1416 1536 0.0
>3x_Contig1416
Length = 10161
Score = 1536 bits (775), Expect = 0.0
Identities = 825/837 (98%), Gaps = 4/837 (0%)
Strand = Plus / Minus
Query: 90 ctgctttctggagtccttcacacacttagcatgaacaggaatcaacccatgaagagataa 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8791 ctgctttctggagtccttcacacacttagcatgaacaggaatcaacccatgaagagataa 8732
Query: 150 tggagattcttcgacaatgtatcccggcttacatttgatctccaaataagggtaacatat 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8731 tggagattcttcgacaatgtatcccggcttacatttgatctccaaataagggtaacatat 8672
Query: 210 ggcatcgcttggactttggatacaatgtggtttgaaacgttctaattggttttcgaattc 269
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8671 ggcatcgcttggacatgggatacaatgtggtttgaaacgttctaattggttttcgaattc 8612
Query: 270 gttgatatatggattagaatattctctaccaagagttggaatgtcaacctcagaagcaca 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8611 gttgatatatggattagaatattctctaccaagagttggaatgtcaacctcagaagcaca 8552
Query: 330 gaagccaacagcgattctttgttcacgataccacaacgcaaacaaaatcggcaacagtat 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8551 gaagccaacagcgattctttgttcacgataccacaacgcaaacaaaatcggcaacagtat 8492
Query: 390 taataaaaacgaaatgactttcagtaagaagcgcccagttgatatcaatccttttctaat 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8491 taataaaaacgaaatgactttcagtaagaagcgcccagttgatatcaatccttttctaat 8432
Query: 450 tatcgaagagatgttagtttcttgagtaggtatttcgtctgttttattcttagcggcctc 509
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8431 tatcgaagagatgttagtttcttgagtaggtatttcgtctgtattattcttagcggcctc 8372
Query: 510 aattattgaggtaggatccttaacaattgtacgctcaccctcatcacccccatcaacttc 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8371 aattattgaggtaggatccttaacaattgtacgctcaccctcatcacccccatcaacttc 8312
Query: 570 gttttcatcctctaacaaattttctgactgctcttcggttgcagattttgggacctcttc 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8311 gttttcatcctctaacaaattttctgactgctcttcggttgcagattttgggacctcttc 8252
Query: 630 ctcgctttcttcatccttggcaaaagtttctgcttttgtaatagtggtatcgctctcttc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8251 ctcgctttcttcatccttggcaaaagtttctgcttttgtaatagtggtatcgctctcttc 8192
Query: 690 cccggtttcagtaataatagattggttcacttgttcctgcaatttttttacttctcttaa 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8191 cccggtttcagtaataatagattggttcacttgttcctgcaatttttttacttctcttaa 8132
Query: 750 agttggcagttcagtcgctggaactttcggcagttctttcttgactgactcttgttctac 809
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8131 agttggcagttcagtcgctggaacttccggcagttctttcttgactgactcttgttctac 8072
Query: 810 tttttgc-aggttttggctggtttggaat-ctcaacc-ttttcttgattggtgt-nactc 865
||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| ||||
Sbjct: 8071 tttttgcaaggttttggctggtttggaatcctcaacctttttcttgattggtgtggactc 8012
Query: 866 actagtagatgggttcaagaacgaatctgtcactgatgggaaatcggctctagnctt 922
||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||
Sbjct: 8011 actagtagatgggttcaaggacgaatctgtcactgatgggaattcggctctagtctt 7955
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6375
Number of Sequences: 1807
Number of extensions: 6375
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)