BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZC08FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1314 0.0
>3x_Contig1536
Length = 11572
Score = 1314 bits (663), Expect = 0.0
Identities = 799/834 (95%), Gaps = 8/834 (0%)
Strand = Plus / Plus
Query: 88 gaatatgacttaactctcactcttattagaatacacttagacaatacatatacaaacatc 147
||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||
Sbjct: 6246 gaatatgacttaactctcactcttatttgaatacacttagacaatacat-tagaaacatc 6304
Query: 148 tgctgtaaaccgtatgtatgatatatgtacttgcattaaagacttttttcaaggcatgat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6305 tgctgtaaaccgtatgtatgatatatgtacttgcattaaagacttttttcaaggc-tgat 6363
Query: 208 atacaatttgaatttttgaagcatccagacaaaagacagaagtaccaaccaacccacata 267
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6364 ata-aatttgaaaaag-gaagcatccagacaaaagacagaagtaccaaccaacccacata 6421
Query: 268 caacaagaaagaaagtaacgaacataccttcttgtgttggaacgatcctattcactctgt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6422 caacaagaaagaaagtaacgaacataccttcttgtgttggaacgatcctattcactctgt 6481
Query: 328 aacggattgcttgaccactggttattgcattgatgtacaattgttccatgaaataaggtc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6482 aacggattgcttgaccactggttattgcattgatgtacaattgttccatgaaataaggtc 6541
Query: 388 ataatttcgtttgttttagttacgtttgagaacgcatacgaaggagatgtcaactgaggc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6542 ataatttcgtttgttttagttacgtttgagaacgcatacgaaggagatgtcaactgaggc 6601
Query: 448 cacgagctctgatgcatcggtgttctccaatatgcattcggtggatagcacaaaggataa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 6602 cacgagctctgatgcatcggtgttctccaatatgcattcggtggatagcacaagggataa 6661
Query: 508 tacaagggataatacaagggataatacacccatgaatgaaggtgacactcaaggtaagcg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6662 tacaagggataatacaagggataatacacccatgaatgaaggtgacactcaaggtaagcg 6721
Query: 568 tatgacgaacagtactatggctttaattgaacagtctatgaagtatgatatgcgcagtga 627
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 6722 tatgacgaagagtactatggctttaattgaagagtctatgaagtatgatatgcgcagtga 6781
Query: 628 gtattttcttcccatgacatttctaagagaacgtcggaaacctgcaagagttgagagcga 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6782 gtattttcttcccatgacatttctaagagaacgtcggaaacctgcaagagttgagagcga 6841
Query: 688 caatgaagataaactagcggaagtaaaatcgaaaaggcgcgtttcgaagtaagaccaggt 747
| | ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 6842 cgaggaagataaactagcggaagtaaaatcgaaaaggcgcgtttcgaagaaggaccaggt 6901
Query: 748 caaggctgatattcattcgacgaagattaagataactgggcgnactttcaatgtcaaagc 807
|||||| ||||||||||||||||| ||||||| |||||| || ||| ||||||||||||
Sbjct: 6902 caaggcggatattcattcgacgaaaattaagaaaactggccgcccttccaatgtcaaagc 6961
Query: 808 tgtagctaagaacactttcaaa-ttaccaagcagaggtcga-caaatcgc-agtttcatg 864
|| ||| |||||||||| |||| |||||||||||||||||| |||||||| ||||||| |
Sbjct: 6962 tggagcgaagaacacttccaaagttaccaagcagaggtcgaccaaatcgcaagtttcagg 7021
Query: 865 caaaaaaaga-ccagatccatttctgatgggaaagagtcattcatagatgcgag 917
|||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct: 7022 caaaaaaagagccagatccatctctgatgggaaagtgtcatccatagatgcgag 7075
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6156
Number of Sequences: 1807
Number of extensions: 6156
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)