BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZC08RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1546 0.0
>3x_Contig1652
Length = 14842
Score = 1546 bits (780), Expect = 0.0
Identities = 849/868 (97%), Gaps = 3/868 (0%)
Strand = Plus / Plus
Query: 50 taagttggaggaatttattaaagaaaaggagaagcaacgtaagaaggacttcttctccaa 109
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 12568 taagttggaggaatcgaagaaagaaaaggagaagcaacgtaagaaggacttcttctccaa 12627
Query: 110 aaacggtaaaaaaagacaattcaacgacaatgacacaagtgatgttatgtcttccaagaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12628 aaacggtaaaaaaagacaattcaacgacaatgacacaagtgatgttatgtcttccaagaa 12687
Query: 170 aaggaaataaactatgtattttaacctatttacattgcataatttgaatgatatagtata 229
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12688 aaggaaataaactatgtattttaacctatttacattgcataatttgaatgatagagtata 12747
Query: 230 aagtaattgttaagaaccaaaatgaactactgtattatttaagagtcgcatttggagttg 289
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 12748 aagtaattgttaagaaccaaaatgaactactgtattagttaagagtcgcatttggagttg 12807
Query: 290 attctgagctggagattttctatgttaatgcaattctaagagaccatgagattctgaaac 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12808 attctgagctggagattttctatgttaatgcaattctaagagaccatgagattctgaaac 12867
Query: 350 atagctaagtattttatgcatatatgattatagttattcttctccatgcttattaggtga 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12868 atagctaagtattttatgcatatatgattatagttattcttctccatgcttattaggtga 12927
Query: 410 tatttgcagttattatatatcgctagtagcgcttgcttaactacttaaatatattcagat 469
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 12928 tatttgcagttattatatatcgttagtagcgcttgcttaactacttaaatatattcagat 12987
Query: 470 agccacttgaaggcttcagagtaaccagacttcatgacaacggaacacatgaacaactcg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12988 agccacttgaaggcttcagagtaaccagacttcatgacaacggaacacatgaacaactcg 13047
Query: 530 ataggtctttgaccttcaattttggtatatccagttgtgttcatcaaacccaatgcagct 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13048 ataggtctttgaccttcaattttggtatatccagttgtgttcatcaaacccaatgcagct 13107
Query: 590 ctcaattcattttcagaaacggcacttggagagtcaatcttgttacccaagacagcaaat 649
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13108 ctcaattcagtttcagaaacggcacttggagagtcaatcttgttacccaagacagcaaat 13167
Query: 650 ggaacgttgtccaattccttgatttggaacatagcatccaattcaatacgtgcttcgtta 709
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 13168 ggaacgttgtccaattccttgatttggaacaaagcatccaattcaatacgtgcttcgtta 13227
Query: 710 aatctctctgggtcagcagcatccactaggaacacaataccattaacttctgggaaataa 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13228 aatctctctgggtcagcagcatccactaggaacacaataccattaacttctgggaaataa 13287
Query: 770 ttcttccacaatctacgtgcttgcatatgtccacctaaatcaaaagtggtgaatttgata 829
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 13288 tccttccacaatctacgtgcttgcaaatgtccacctaaatcaaaagtggtgaatttgata 13347
Query: 830 ttaccgatcgccaatttcttcagaagttgggtgccaagtttgtttgcaaagntacctaat 889
|||||||||||||| ||||||||||||||||||||||| ||| |||||||| || |||||
Sbjct: 13348 ttaccgatcgccaa-ttcttcagaagttgggtgccaag-ttggttgcaaag-tagctaat 13404
Query: 890 ctattgttctttcacatatgtaacaagg 917
|||| |||||| |||||||||||||||
Sbjct: 13405 ctatcgttcttcaacatatgtaacaagg 13432
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7770
Number of Sequences: 1807
Number of extensions: 7770
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)