BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC16ZC09FM1.SCF screened BAC_end
         (985 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1442                                                        1590   0.0  

>3x_Contig1442 
          Length = 8270

 Score = 1590 bits (802), Expect = 0.0
 Identities = 857/869 (98%), Gaps = 5/869 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   taacaaacgatcgtctccagatcaattgagctataactctttcaccactatgaagaaaaa 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238 taacaaacgatcgtctccagatcaattgagctataactctttcaccactatgaagaaaaa 5179

                                                                        
Query: 146  tcacataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagtgaaaag 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5178 tcacataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagtgaaaag 5119

                                                                        
Query: 206  aaaaaaacaccat-tgtattttcactggctcctgaacaacaccttatatttcaaaacaat 264
            ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5118 aaaaaaacaccaaatgtatcttcactggctcctgaacaacaccttatatttcaaaacaat 5059

                                                                        
Query: 265  aaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttacgtatg 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5058 aaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttacgtatg 4999

                                                                        
Query: 325  ttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgctgaag 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4998 ttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgctgaag 4939

                                                                        
Query: 385  agggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaaagatc 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4938 agggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaaagatc 4879

                                                                        
Query: 445  tttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctcagtgg 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4878 tttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctcagtgg 4819

                                                                        
Query: 505  ttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagttggag 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818 ttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagttggag 4759

                                                                        
Query: 565  ggattgttgtagcttctgttgggttttgttgttgcggttgatgatgatggtggtgatgat 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4758 ggattgttgtagcttctgttgggttttgttgttgcggttgatgatgatggtggtgatgat 4699

                                                                        
Query: 625  gggtattctgatgttctggatccgtgtctgattcagaagcgtctctggtaggcgtttgaa 684
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4698 gggtattctgatgttctggatccgtgtctgattcagaagcgtctctggtaggcgtttgaa 4639

                                                                        
Query: 685  ctcctgtactatttccagtggtgtttgttgagtttgattcttgacaccagtacctatgaa 744
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4638 ctcctgtactatttccagtggtgtttgttgagtttgattcttgacaccagtacctatgaa 4579

                                                                        
Query: 745  attcccatgatttcagttggcacagtcttgagcaatatttggtgcgcttacaccttctac 804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4578 attcccatgatttcagttggcacagtcttgagcaatatttggtgcgcttacaccttctac 4519

                                                                        
Query: 805  atttggggaactgttttggatgatctttccatttcccacagctgaaattagcacactgcc 864
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4518 atttggggaactgttttggatgatcttcccatttcccacagctgaaattagcacactgcc 4459

                                                                        
Query: 865  tgactcctgtagcctcatgtttnctgcacgaattttctctttaccacggagcttcagtag 924
            |||||||||||||||||||||| ||||||| | |||||| ||||||||||||| ||||||
Sbjct: 4458 tgactcctgtagcctcatgtttcctgcacg-agtttctcattaccacggagctccagtag 4400

                                         
Query: 925  ttgcacgaatttcgttttaaggagccctt 953
             |||||| |||||| ||||||||||||||
Sbjct: 4399 -tgcacg-atttcg-tttaaggagccctt 4374


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7032
Number of Sequences: 1807
Number of extensions: 7032
Number of successful extensions: 111
Number of sequences better than 1.0e-20: 1
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)