BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC16ZC10FM1.SCF screened BAC_end
         (955 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1442                                                        1580   0.0  

>3x_Contig1442 
          Length = 8270

 Score = 1580 bits (797), Expect = 0.0
 Identities = 848/861 (98%), Gaps = 3/861 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   taacaaacgatcgtctccagatcaattgagctataactctttcaccactatgaagaaaaa 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238 taacaaacgatcgtctccagatcaattgagctataactctttcaccactatgaagaaaaa 5179

                                                                        
Query: 147  tcacataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagtgaaaag 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5178 tcacataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagtgaaaag 5119

                                                                        
Query: 207  aaaaaaacaccaaatgtatcttcactggctcctgaacaacaccttatatttcaaaacaat 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5118 aaaaaaacaccaaatgtatcttcactggctcctgaacaacaccttatatttcaaaacaat 5059

                                                                        
Query: 267  aaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttacgtatg 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5058 aaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttacgtatg 4999

                                                                        
Query: 327  ttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgctgaag 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4998 ttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgctgaag 4939

                                                                        
Query: 387  agggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaaagatc 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4938 agggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaaagatc 4879

                                                                        
Query: 447  tttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctcagtgg 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4878 tttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctcagtgg 4819

                                                                        
Query: 507  ttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagttggag 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818 ttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagttggag 4759

                                                                        
Query: 567  ggattgttgtagcttctgttgggttttgttgttgcggttgatgatgatggtggtgatgat 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4758 ggattgttgtagcttctgttgggttttgttgttgcggttgatgatgatggtggtgatgat 4699

                                                                        
Query: 627  gggtattctgatgttctggatccgtgtctgattcagaagcgtctctggtaggcgtttgaa 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4698 gggtattctgatgttctggatccgtgtctgattcagaagcgtctctggtaggcgtttgaa 4639

                                                                        
Query: 687  ctcctgtactatttccagtggtgtttgttgagtttgattcttgacaccagtacctatgaa 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4638 ctcctgtactatttccagtggtgtttgttgagtttgattcttgacaccagtacctatgaa 4579

                                                                        
Query: 747  attcccatgatttcagttggcacagtcttgagcaatatttggtgcgcttacaccttctac 806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4578 attcccatgatttcagttggcacagtcttgagcaatatttggtgcgcttacaccttctac 4519

                                                                        
Query: 807  atttggggaactgttttggatgatccttccattttccacagctgaaaatagcacactgcc 866
            ||||||||||||||||||||||||| | |||||| |||||||||||| ||||||||||||
Sbjct: 4518 atttggggaactgttttggatgatcttcccatttcccacagctgaaattagcacactgcc 4459

                                                                        
Query: 867  tgacttcctgta-cctcatgttttctgcacgagtttttcattaccacggaacttcagtaa 925
            |||| ||||||| |||||||||| |||||||||||| ||||||||||||| || ||||| 
Sbjct: 4458 tgac-tcctgtagcctcatgtttcctgcacgagtttctcattaccacggagctccagtag 4400

                                 
Query: 926  tgcccggatttcgtttaagga 946
            ||| | |||||||||||||||
Sbjct: 4399 tgcac-gatttcgtttaagga 4380


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6957
Number of Sequences: 1807
Number of extensions: 6957
Number of successful extensions: 116
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)