BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZC11FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1643 1604 0.0
>3x_Contig1643
Length = 10865
Score = 1604 bits (809), Expect = 0.0
Identities = 853/867 (98%), Gaps = 1/867 (0%)
Strand = Plus / Minus
Query: 82 ctgggttagatatgtcaaggaagagactctaaacataacaatagagaatattatggtatt 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1691 ctgggttagatatgtcaaggaagagactctaaacataacaatagagaatattatggtatt 1632
Query: 142 aattaatatactattagtgaaaggttgtaatgtgaatgttgaagggtacgcgtactactg 201
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1631 aattaatatactattagtgaaaggttggaatgtgaatgttgaagggtacgcgtactactg 1572
Query: 202 taccactattcttttaaatttatcatatctcatccctgatacagaaattaagatggtacg 261
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1571 taccactattcattaaaatttatcatatctcatccctgatacagaaattaagatggtacg 1512
Query: 262 tcgagcaaaattatttgacattgttactgaattaactgcatgatgatgtttagttttgtt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1511 tcgagcaaaattatttgacattgttactgaattaactgcatgatgatgtttagttttgtt 1452
Query: 322 cgttagattcgttactggatggggtttgagtgttatcgttagcagttgcatcggactttt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1451 cgttagattcgttactggatggggtttgagtgttatcgttagcagttgcatcggactttt 1392
Query: 382 cagcattattttcagtaacgttcttagaagacttttttctttggaacaaagagaaacctg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 cagcattattttcagtaacgttcttagaagacttttttctttggaacaaagagaaacctg 1332
Query: 442 gatgagattgttccttgctgtcaacgtcttcttctaattcatcttccttttctagatcgt 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1331 gatgagattgttccttgctgtcaacgtcttcttctaattcatcttccttttctagatcgt 1272
Query: 502 catcgtatagacccaacgcgttaccgtgatcttcgatttcagcaagagatagttttggca 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 catcgtatagacccaacgcgttaccgtgatcttcgatttcagcaagagatagttttggca 1212
Query: 562 agttggcagcgactctccatgcagcagtcttatcagtgtaagacttggcgaagatgatat 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 agttggcagcgactctccatgcagcagtcttatcagtgtaagacttggcgaagatgatat 1152
Query: 622 cgatttcttccaaagttctacctgcagtttctgggtagaagaagaagatgactggcaaat 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 cgatttcttccaaagttctacctgcagtttctgggtagaagaagaagatgactggcaaat 1092
Query: 682 agaggaagttaatacacgcgaagaataagtagcaaccccagccagcgtcttgaatgaaaa 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 agaggaagttaatacacgcgaagaataagtagcaaccccagccagcgtcttgaatgaaaa 1032
Query: 742 ttggggtaaacatgacaacggcaaagttacacaaccagttggtacatgtggaaaaggcat 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 ttggggtaaacatgacaacggcaaagttacacaaccagttggtacatgtggaaaaggcat 972
Query: 802 tagtcatggaacgaactctcatagaagcaatttctggtgggtaaattcatggtagagata 861
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 971 tagtcatggaacgaactctcatagaagcaatttctggtgggtaaatccatggtagagata 912
Query: 862 gaatggacataccgnagaagacgattaaacagaaacaaccaacggctgcaccctttacat 921
|||||||||||||| |||||||||| || |||| ||||||||||||||||||| |||
Sbjct: 911 gaatggacataccgaagaagacgataaacaagaacaaaccaacggctgcacccttagcat 852
Query: 922 tttgtgtagngtcattgaaccaaacag 948
||||||||| |||| ||||||||||||
Sbjct: 851 tttgtgtagtgtca-tgaaccaaacag 826
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8045
Number of Sequences: 1807
Number of extensions: 8045
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)