BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC16ZC11RM1.SCF screened BAC_end
         (939 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig669                                                         1043   0.0  

>3x_Contig669 
          Length = 2015

 Score = 1043 bits (526), Expect = 0.0
 Identities = 577/586 (98%), Gaps = 6/586 (1%)
 Strand = Plus / Plus

                                                                       
Query: 309 gtaaaagttcatcaactgatttgttggttagagcagggctgctgctggacgattttttac 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtaaaagttcatcaactgatttgttggttagagcagggctgctgctggacgattttttac 60

                                                                       
Query: 369 ctttcttttgagaaatattagctggtttag-ttgcttgctgagcggaagcgag-tttctt 426
           |||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct: 61  ctttcttttgagaaatattagctggtttagcttgcttgctgagcggaagcgcgctttctt 120

                                                                       
Query: 427 ttcttgttgttgcttagtaataatacctttaatagtttcggaccattgtttcgaagtcaa 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcttgttgttgcttagtaataatacctttaatagtttcggaccattgtttcgaagtcaa 180

                                                                       
Query: 487 ggtagtttgatcatttaaccctaattctttcgagaaaatggatttggctttctcaatatg 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtagtttgatcatttaaccctaattctttcgagaaaatggatttggctttctcaatatg 240

                                                                       
Query: 547 agataatgcatgagacatgtcatccaaagaggtatacaagttggcaatacgtgattcatt 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agataatgcatgagacatgtcatccaaagaggtatacaagttggcaatacgtgattcatt 300

                                                                       
Query: 607 ttgaccatatggtaatgtttcttcgctaccagtgatctttagaagcaactcagacagctt 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgaccatatggtaatgtttcttcgctaccagtgatctttagaagcaactcagacagctt 360

                                                                       
Query: 667 gttcaaaatcttgatctgaactttcttatcctcagtactagcagcaatttggaataataa 726
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttcaaaatcttgatctgaactttcttatcctcagtactagcagcaatttggaataataa 420

                                                                       
Query: 727 attgaatacattaaccctaccagagtggacaaaaggagctaaaagcttcaataattcatg 786
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attgaatacattaaccctaccagagtggacaaaaggagctaaaagcttcaataattcatg 480

                                                                       
Query: 787 gacttttcttaaatacaaagcgcagagttgtagatagaagccttggccgtattcaaggta 846
           ||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 481 gac-tttcttcaatac-aagcgcagagttgtagatag-agccttggccgtattcaaggta 537

                                                         
Query: 847 tgccaagttttgacaaatttctaacggtttcaaatgaatcaacacc 892
           ||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 538 tgccaag-tttgacaaaattctaacggtttcaaatgaatcaacacc 582


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,156
Number of Sequences: 1807
Number of extensions: 10156
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)