BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC16ZC11RM1.SCF screened BAC_end (939 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig669 1043 0.0 >3x_Contig669 Length = 2015 Score = 1043 bits (526), Expect = 0.0 Identities = 577/586 (98%), Gaps = 6/586 (1%) Strand = Plus / Plus Query: 309 gtaaaagttcatcaactgatttgttggttagagcagggctgctgctggacgattttttac 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gtaaaagttcatcaactgatttgttggttagagcagggctgctgctggacgattttttac 60 Query: 369 ctttcttttgagaaatattagctggtttag-ttgcttgctgagcggaagcgag-tttctt 426 |||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| Sbjct: 61 ctttcttttgagaaatattagctggtttagcttgcttgctgagcggaagcgcgctttctt 120 Query: 427 ttcttgttgttgcttagtaataatacctttaatagtttcggaccattgtttcgaagtcaa 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ttcttgttgttgcttagtaataatacctttaatagtttcggaccattgtttcgaagtcaa 180 Query: 487 ggtagtttgatcatttaaccctaattctttcgagaaaatggatttggctttctcaatatg 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ggtagtttgatcatttaaccctaattctttcgagaaaatggatttggctttctcaatatg 240 Query: 547 agataatgcatgagacatgtcatccaaagaggtatacaagttggcaatacgtgattcatt 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 agataatgcatgagacatgtcatccaaagaggtatacaagttggcaatacgtgattcatt 300 Query: 607 ttgaccatatggtaatgtttcttcgctaccagtgatctttagaagcaactcagacagctt 666 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ttgaccatatggtaatgtttcttcgctaccagtgatctttagaagcaactcagacagctt 360 Query: 667 gttcaaaatcttgatctgaactttcttatcctcagtactagcagcaatttggaataataa 726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gttcaaaatcttgatctgaactttcttatcctcagtactagcagcaatttggaataataa 420 Query: 727 attgaatacattaaccctaccagagtggacaaaaggagctaaaagcttcaataattcatg 786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 attgaatacattaaccctaccagagtggacaaaaggagctaaaagcttcaataattcatg 480 Query: 787 gacttttcttaaatacaaagcgcagagttgtagatagaagccttggccgtattcaaggta 846 ||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 481 gac-tttcttcaatac-aagcgcagagttgtagatag-agccttggccgtattcaaggta 537 Query: 847 tgccaagttttgacaaatttctaacggtttcaaatgaatcaacacc 892 ||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct: 538 tgccaag-tttgacaaaattctaacggtttcaaatgaatcaacacc 582 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,156 Number of Sequences: 1807 Number of extensions: 10156 Number of successful extensions: 74 Number of sequences better than 1.0e-20: 1 length of query: 939 length of database: 10,358,551 effective HSP length: 16 effective length of query: 923 effective length of database: 10,329,639 effective search space: 9534256797 effective search space used: 9534256797 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)