BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZC12FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1212 1683 0.0
>3x_Contig1212
Length = 5727
Score = 1683 bits (849), Expect = 0.0
Identities = 881/891 (98%), Gaps = 1/891 (0%)
Strand = Plus / Minus
Query: 83 agttctgggttttgtcgtgacctttacatgcaacctttaagcactcttcctcataaccag 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5171 agttctgggttttgtcgtgacctttacatgcaacctttaagcactcttcctcataaccag 5112
Query: 143 gaatgagaatatagtcgattccatattgtgccaacttgtgatagctggtattattcttga 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5111 gaatgagaatatagtcgattccatattgtgccaacttgtgatagctggtattattcttga 5052
Query: 203 caaaaatgtccgtnttcataacacccacgaagacagtctttatagcgccagttgtttgga 262
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5051 caaaaatgtccggttccataacacccacgaagacagtctttatagcgccagttgtttgga 4992
Query: 263 ttattcggtctacgcatggcaagttaccactgagccttagagaacaaggttccattgttg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4991 ttattcggtctacgcatggcaagttaccactgagccttagagaacaaggttccattgttg 4932
Query: 323 tgtaaatgatggttccatctggaagtttcgcaccttctgattttgtgaagtatttatcta 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931 tgtaaatgatggttccatctggaagtttcgcaccttctgattttgtgaagtatttatcta 4872
Query: 383 atgcacattgctcagcatgagtatttcctggtaattctctcgaataaccggtggaaagta 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4871 atgcacattgctcagcatgagtatttcctggtaattctctcgaataaccggtggaaagta 4812
Query: 443 tatcagttccgttgacaaggagtgcgcctacattaaaggcagtttgagtttcaccacaat 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4811 tatcagttccgttgacaaggagtgcgcctacattaaaggcagtttgagtttcaccacaat 4752
Query: 503 ttcttgcctcatctatcgccaactccataaattttctgtgcggctcaatcgcccagtcag 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4751 ttcttgcctcatctatcgccaactccataaattttctgtgcggctcaatcgcccagtcag 4692
Query: 563 ggaagtccgttctgtaactccataatttttttccatcagaatcaagctcggtggattcgt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4691 ggaagtccgttctgtaactccataatttttttccatcagaatcaagctcggtggattcgt 4632
Query: 623 accgataagcatgaagccacaaatcaagatcatttggaccaggatctgaatatagctctg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4631 accgataagcatgaagccacaaatcaagatcatttggaccaggatctgaatatagctctg 4572
Query: 683 tgtcacaaatttcacattgctgaccgagtaagacttcaccaaatgaatcaggatgcatcc 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4571 tgtcacaaatttcacattgctgaccgagtaagacttcaccaaatgaatcaggatgcatcc 4512
Query: 743 aactctcggcggactcagtcttgccgacaagatctaagctccctataatatctgagaaat 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4511 aactctcggcggactcagtcttgccgacaagatctaagctccctataatatctgagaaat 4452
Query: 803 ctncttcgtaatctttgcccaaggatggtccccaaatgtgaggatttgagtatataggat 862
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4451 ctccttcgtaatctttgcccaaggatggtccccaaatgtgaggatttgagtatataggat 4392
Query: 863 cgttagcaatgggatgtcctagatgttgtagatgaactcctatttgatgagttctaccag 922
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4391 cgttagcaatgggatgtcctagatgttgtagatgaactctaatttgatgagttctaccag 4332
Query: 923 tgaaatgccttgcacctaaacatactagtcttgccatcgaaacttatcctt 973
|| |||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4331 tg-aatggcttgcacctaacaatactagtcttgccatcgaaacttatcctt 4282
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5232
Number of Sequences: 1807
Number of extensions: 5232
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)