BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZC12RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1522 1626 0.0
>3x_Contig1522
Length = 7810
Score = 1626 bits (820), Expect = 0.0
Identities = 884/902 (98%), Gaps = 3/902 (0%)
Strand = Plus / Minus
Query: 48 ttattttagataaacaaatcgtacaatcctctaattccgtcccgctggtcatcttttgca 107
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 6383 ttattttagataaacaaatcgaacaatcctctaattccgtcccgctggtcatcttttgca 6324
Query: 108 aggctttcatcttttgaatagcttctttattgaatgcattagctttccttctccaagatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6323 aggctttcatcttttgaatagcttctttattgaatgcattagctttccttctccaagatt 6264
Query: 168 tattgagctccactctcattttaacacacctgtaaatttcttccgcaccaccctggaagt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 6263 tattgagctccactctcattttaacacacctgtaaatttcttccgcaccaccccggaagt 6204
Query: 228 ctaatccgagttgtaatatatcgccgtcctttatctgaaaatccttggacatagtagctg 287
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 6203 ctaatccgagttgtaatatatcgccgtcctttaacagaaaatccttggacatagtagctg 6144
Query: 288 gctgagaaagtctttgatgattcaagaacgtccctgatgatgatttgacatctttcacaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6143 gctgagaaagtctttgatgattcaagaacgtccctgatgatgatttgacatctttcacaa 6084
Query: 348 accaatttccattatcgtcaactttgaaaacaccatgtgtccttgagacgactttactct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6083 accaatttccattatcgtcaactttgaaaacaccatgtgtccttgagacgactttactct 6024
Query: 408 tgaatacggctggatggaacggttcgggaatagaagaaatggcctctctgaccttttctg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6023 tgaatacggctggatggaacggttcgggaatagaagaaatggcctctctgaccttttctg 5964
Query: 468 tgtaccttccgattaccaactgagaaccaggaccagcagttcttatgatcggatcaaaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5963 tgtaccttccgattaccaactgagaaccaggaccagcagttcttatgatcggatcaaaat 5904
Query: 528 agaaaccggggttaccagccgatgagttgtctataaatgcggtcaatcttaaagtgaata 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5903 agaaaccggggttaccagccgatgagttgtctataaatgcggtcaatcttaaagtgaata 5844
Query: 588 atccgtttttatccttacgatttctaacagtttcatcatctgcagcttccggctgggccc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5843 atccgtttttatccttacgatttctaacagtttcatcatctgcagcttccggctgggccc 5784
Query: 648 aatcaggtgcaaagtctagatgcaacgatggcgctgatgctggccttactgctgggtata 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5783 aatcaggtgcaaagtctagatgcaacgatggcgctgatgctggccttactgctgggtata 5724
Query: 708 tgaaatgatgaacgtttttcagagcttgaccgttttgagggatggtaccgtgtataggag 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5723 tgaaatgatgaacgtttttcagagcttgaccgttttgagggatggtaccgtgtataggag 5664
Query: 768 gtgaagtgagcgggatatgatgaatatcgnttgtgttattaccaccattttcattagtct 827
| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 5663 gggaagtgagcgggatatgatgaatatcgtttgtgttattaccaccatttccattagtct 5604
Query: 828 caatttgtcccaatacaagatttgatcggtaatatatttccttgtcagggcactatcacc 887
|||||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||
Sbjct: 5603 caatttgtcccaatacaaga-ttgatcggtaaatgatttcc-tgtcagtgcactatcacc 5546
Query: 888 aactggtgcagaaagagctcctttcaactgcgatggtttgctcaaacaaatcanacgggg 947
|||||||||||||||||||||| ||||||||||||| ||||||| || ||||| ||||||
Sbjct: 5545 aactggtgcagaaagagctcctgtcaactgcgatgg-ttgctcagacgaatcaaacgggg 5487
Query: 948 tt 949
||
Sbjct: 5486 tt 5485
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6385
Number of Sequences: 1807
Number of extensions: 6385
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)