BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD01FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1637 1556 0.0
>3x_Contig1637
Length = 14855
Score = 1556 bits (785), Expect = 0.0
Identities = 865/882 (98%), Gaps = 8/882 (0%)
Strand = Plus / Plus
Query: 85 cttaatctttaagaataccaaaagtcaacttgaaatagaagaagtacaggctcaacttcc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8577 cttaatctttaagaataccaaaagtcaacttgaaatagaagaagtacaggctcaacttcc 8636
Query: 145 accaagagataaccatatacgcactagcaatggagcaggcatctaatggtatgtgcctat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8637 accaagagataaccatatacgcactagcaatggagcaggcatctaatggtatgtgcctat 8696
Query: 205 ggagtttccatattgttgatttgctttgtaggtcatacaattcactcatactaactacca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8697 ggagtttccatattgttgatttgctttgtaggtcatacaattcactcatactaactacca 8756
Query: 265 ggatataaatcccattgcccaagttcttcagttgaaatacaatgagtttaaaggcacact 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8757 ggatataaatcccattgcccaagttcttcagttgaaatacaatgagtttaaaggcacact 8816
Query: 325 agaagaattacaatctaagattatcgagctaggtcgtgataaggatgaacatgatatagt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8817 agaagaattacaatctaagattatcgagctaggtcgtgataaggatgaacatgatatagt 8876
Query: 385 tcttaagacattaaacgaaacagatccagaaaggaagtgctacagaatggtaggcagcgc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8877 tcttaagacattaaacgaaacagatccagaaaggaagtgctacagaatggtaggcagcgc 8936
Query: 445 attagtcgataccgatgtgaaaacaacgatacctgttctacagaacaatagagacaaatt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8937 attagtcgataccgatgtgaaaacaacgatacctgttctacagaacaatagagacaaatt 8996
Query: 505 agaacaaacagtttccacgttgaagggacaattgataaagacagcagaagagttcgaaaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8997 agaacaaacagtttccacgttgaagggacaattgataaagacagcagaagagttcgaaaa 9056
Query: 565 atggaagaaggataataaaatccaagttgtgagacaatgagacgcatgacacaatggttg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9057 atggaagaaggataataaaatccaagttgtgagacaatgagacgcatgacacaatggttg 9116
Query: 625 cggatctaaactggttagccaaaaaaatccatcgaacataataaacggggtgataaactc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9117 cggatctaaactggttagccaaaaaaatccatcgaacataataaacggggtgataaactc 9176
Query: 685 catgaatatgcataacatnntgctgttaa-ttatttctatacaatancttttctatagtg 743
|||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct: 9177 catgaatatgcataacat-ttgctgttaatttatttctatacaatactttttctatagtg 9235
Query: 744 tatgtataacaaatgtaaactactttcctaacagagattccagtttttttgggtttcagt 803
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9236 tatgtataacaaatgtaaactactttcctaacagagattccagtttttttgggtttcag- 9294
Query: 804 tttcctttatacctaatcattgttngttcttgacagaat-aaccggtagactgctggatg 862
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 9295 tttcctttatacctaatcattgttgtttcttgacagaatcaaccggtagactgctggatg 9354
Query: 863 aagcgataaagaaagcc-ccaacagaatgaaagaaa-tattacagatccgattgctggtt 920
||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| |||
Sbjct: 9355 aagcgataaagaaagccacaaacagaatgaaagaaattattacagatccgattgct-gtt 9413
Query: 921 aga-acacccatgaaattgggattccgtaacttcttgcgtat 961
||| ||||||||||| ||| |||| |||||||||||||||||
Sbjct: 9414 agatacacccatgaatttgtgatttcgtaacttcttgcgtat 9455
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6631
Number of Sequences: 1807
Number of extensions: 6631
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)