BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD01RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1559 1647 0.0
>3x_Contig1559
Length = 10415
Score = 1647 bits (831), Expect = 0.0
Identities = 864/871 (99%), Gaps = 3/871 (0%)
Strand = Plus / Minus
Query: 44 gcttttcctgagt-aattttctct-tgcagaacctttcaattgtgttttcaaatacaaga 101
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 9606 gcttttcctgagtcaattttctctgtgcagaacctttcaattgtgttttcaaatacaaga 9547
Query: 102 tgtagttttcccttttgattaatcttaatctgaagtgatcgaatacatccctttgtattg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9546 tgtagttttcccttttgattaatcttaatctgaagtgatcgaatacatccctttgtattg 9487
Query: 162 accctctaaggcgagcttgtaatgtcaccaaagcttcatttggcttatggttctgaacga 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9486 accctctaaggcgagcttgtaatgtcaccaaagcttcatttggcttatggttctgaacga 9427
Query: 222 agttctgatgttgtcctctgatgactgcccccttacaaagcgcctgcagttctgcaaatc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9426 agttctgatgttgtcctctgatgactgcccccttacaaagcgcctgcagttctgcaaatc 9367
Query: 282 tggtattgctatgcttcagcgtaattatcttcaaatggacatcgtaacgtgtattaagac 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9366 tggtattgctatgcttcagcgtaattatcttcaaatggacatcgtaacgtgtattaagac 9307
Query: 342 ctctaagtaatgcttgcaaatgagtgacagtatccaaaaactctgtttcggtcattcttt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9306 ctctaagtaatgcttgcaaatgagtgacagtatccaaaaactctgtttcggtcattcttt 9247
Query: 402 cacgtcgttttggcgaatactgggtgctgccatacctataagtatcgtaataatcaaaat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9246 cacgtcgttttggcgaatactgggtgctgccatacctataagtatcgtaataatcaaaat 9187
Query: 462 cataattccattgatgccttttcctgttgaagtacccgatgtcttctgttctataggata 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9186 cataattccattgatgccttttcctgttgaagtacccgatgtcttctgttctataggata 9127
Query: 522 atctccttgacacaccaggcgaatagtaagagaatgtcctatcaggactatatttcaagc 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9126 atctccttgacacaccaggcgaatagtaagagaatgtcctatcaggactatatttcaagc 9067
Query: 582 gctgtgggctagactccgttggatatgaaagagatagtggcttcgtctcagaaagcgaag 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9066 gctgtgggctagactccgttggatatgaaagagatagtggcttcgtctcagaaagcgaag 9007
Query: 642 gattgaattgacgtatgtcgtgcacgattgcagaagaatatctggtaggcgtcttaggag 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9006 gattgaattgacgtatgtcgtgcacgattgcagaagaatatctggtaggcgtcttaggag 8947
Query: 702 attctggtatgcaaacttcaggctcagtttttaatttcacaggactttgaagaactgctg 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8946 attctggtatgcaaacttcaggctcagtttttaatttcacaggactttgaagaactgctg 8887
Query: 762 agtccagtaatcccttttgtggagactttttaggagatgatggtttggaaccgaattggt 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8886 agtccagtaatcccttttgtggagactttttaggagatgatggtttggaaccgaattggt 8827
Query: 822 tgaatgatctaaa-gcatgtacaccagtaacttttctttgacagagcttgatatcattca 880
||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct: 8826 tgaatgatctaaaggcatgtacaccaggaactttcctttgacagagcttgatatcatcaa 8767
Query: 881 tagaaacgtctatttgaccagtcagattctg 911
|||||||||||||||||||||||||||||||
Sbjct: 8766 tagaaacgtctatttgaccagtcagattctg 8736
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6191
Number of Sequences: 1807
Number of extensions: 6191
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)