BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC16ZD02FM1.SCF screened BAC_end
         (959 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1046                                                        1614   0.0  

>3x_Contig1046 
          Length = 3637

 Score = 1614 bits (814), Expect = 0.0
 Identities = 859/874 (98%), Gaps = 1/874 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   tttgttttagtattcttgtcctctccccaatcaacagataccaatacatacacaaatctt 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415  tttgttttagtattcttgtcctctccccaatcaacagataccaatacatacacaaatctt 474

                                                                        
Query: 146  ctacctcagcctctagtatcctgaaattatcatgcttcatcagttttgggttttggcagc 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475  ctacctcagcctctagtatcctgaaattatcatgcttcatcagttttgggttttggcagc 534

                                                                        
Query: 206  tgcctttacactattttcatcagcatttgctgatgactatgaatcatccactacgcgaac 265
            ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535  tgcctttacactatcgtcatcagcatttgctgatgactatgaatcatccactacgcgaac 594

                                                                        
Query: 266  tttattccccaccaatatcagcggtattgatccaattgctaaacaaagagatgttttgta 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595  tttattccccaccaatatcagcggtattgatccaattgctaaacaaagagatgttttgta 654

                                                                        
Query: 326  tactgaaccagaggaaaacaccatcactgttggcgaagtttaccaaaatgtggctgctgt 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655  tactgaaccagaggaaaacaccatcactgttggcgaagtttaccaaaatgtggctgctgt 714

                                                                        
Query: 386  ttctgtagcctcttccacgaaacccacccgtgtttctgctactagcgttcaggtgacttc 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715  ttctgtagcctcttccacgaaacccacccgtgtttctgctactagcgttcaggtgacttc 774

                                                                        
Query: 446  acttggtacttccaccgtaataattgacctgtcaaaagaggcaactagtgtttacgaagt 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775  acttggtacttccaccgtaataattgacctgtcaaaagaggcaactagtgtttacgaagt 834

                                                                        
Query: 506  ttccccatcgcaagagtctgctatcgtttcaagcgtcactcagcccgaagagtcaaccat 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835  ttccccatcgcaagagtctgctatcgtttcaagcgtcactcagcccgaagagtcaaccat 894

                                                                        
Query: 566  tgtttctgatgtttctgatgtttctgaagacgcgacatacttttcatctaccagcaacaa 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895  tgtttctgatgtttctgatgtttctgaagacgcgacatacttttcatctaccagcaacaa 954

                                                                        
Query: 626  cgttacttcacaaataccggttactgaaaaatatacggaaacaaaacctacgtccacatc 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955  cgttacttcacaaataccggttactgaaaaatatacggaaacaaaacctacgtccacatc 1014

                                                                        
Query: 686  tgtgatcttttctacttcaaccacagctgatccttctgtaaccaaaggtacaacacttac 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 tgtgatcttttctacttcaaccacagctgatccttctgtaaccaaaggtacaacacttac 1074

                                                                        
Query: 746  taccattgagtcgaaatctcaacctctagttactcaatctatggtctcatcggagcaaac 805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 taccattgagtcgaaatctcaacctctagttactcaatctatggtctcatcggagcaaac 1134

                                                                        
Query: 806  agtaacccttgaaaccagcactctatcatcgnaccaaactttcagtnctacnggaatcac 865
            ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||
Sbjct: 1135 agtaacccttgaaaccagcactctatcatcggaccaaactttcagtcctacgggaatcac 1194

                                                                        
Query: 866  taccacagaaaacacccttttttttcacctacacatggactgttacttctacttttgttt 925
            |||||||| ||||| ||| | | | ||||||||||| |||||||||||||||||||||||
Sbjct: 1195 taccacag-aaacaacctctctctccacctacacatcgactgttacttctacttttgttt 1253

                                              
Query: 926  ccacctcgtattcaatgtngtcctctttctatgg 959
            ||| |||||||||||||  |||||||||||||||
Sbjct: 1254 ccagctcgtattcaatggtgtcctctttctatgg 1287


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6081
Number of Sequences: 1807
Number of extensions: 6081
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)