BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC16ZD02FM1.SCF screened BAC_end (959 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1046 1614 0.0 >3x_Contig1046 Length = 3637 Score = 1614 bits (814), Expect = 0.0 Identities = 859/874 (98%), Gaps = 1/874 (0%) Strand = Plus / Plus Query: 86 tttgttttagtattcttgtcctctccccaatcaacagataccaatacatacacaaatctt 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 415 tttgttttagtattcttgtcctctccccaatcaacagataccaatacatacacaaatctt 474 Query: 146 ctacctcagcctctagtatcctgaaattatcatgcttcatcagttttgggttttggcagc 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 475 ctacctcagcctctagtatcctgaaattatcatgcttcatcagttttgggttttggcagc 534 Query: 206 tgcctttacactattttcatcagcatttgctgatgactatgaatcatccactacgcgaac 265 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 535 tgcctttacactatcgtcatcagcatttgctgatgactatgaatcatccactacgcgaac 594 Query: 266 tttattccccaccaatatcagcggtattgatccaattgctaaacaaagagatgttttgta 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 595 tttattccccaccaatatcagcggtattgatccaattgctaaacaaagagatgttttgta 654 Query: 326 tactgaaccagaggaaaacaccatcactgttggcgaagtttaccaaaatgtggctgctgt 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 655 tactgaaccagaggaaaacaccatcactgttggcgaagtttaccaaaatgtggctgctgt 714 Query: 386 ttctgtagcctcttccacgaaacccacccgtgtttctgctactagcgttcaggtgacttc 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 715 ttctgtagcctcttccacgaaacccacccgtgtttctgctactagcgttcaggtgacttc 774 Query: 446 acttggtacttccaccgtaataattgacctgtcaaaagaggcaactagtgtttacgaagt 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 775 acttggtacttccaccgtaataattgacctgtcaaaagaggcaactagtgtttacgaagt 834 Query: 506 ttccccatcgcaagagtctgctatcgtttcaagcgtcactcagcccgaagagtcaaccat 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 835 ttccccatcgcaagagtctgctatcgtttcaagcgtcactcagcccgaagagtcaaccat 894 Query: 566 tgtttctgatgtttctgatgtttctgaagacgcgacatacttttcatctaccagcaacaa 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 895 tgtttctgatgtttctgatgtttctgaagacgcgacatacttttcatctaccagcaacaa 954 Query: 626 cgttacttcacaaataccggttactgaaaaatatacggaaacaaaacctacgtccacatc 685 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 955 cgttacttcacaaataccggttactgaaaaatatacggaaacaaaacctacgtccacatc 1014 Query: 686 tgtgatcttttctacttcaaccacagctgatccttctgtaaccaaaggtacaacacttac 745 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1015 tgtgatcttttctacttcaaccacagctgatccttctgtaaccaaaggtacaacacttac 1074 Query: 746 taccattgagtcgaaatctcaacctctagttactcaatctatggtctcatcggagcaaac 805 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1075 taccattgagtcgaaatctcaacctctagttactcaatctatggtctcatcggagcaaac 1134 Query: 806 agtaacccttgaaaccagcactctatcatcgnaccaaactttcagtnctacnggaatcac 865 ||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||| Sbjct: 1135 agtaacccttgaaaccagcactctatcatcggaccaaactttcagtcctacgggaatcac 1194 Query: 866 taccacagaaaacacccttttttttcacctacacatggactgttacttctacttttgttt 925 |||||||| ||||| ||| | | | ||||||||||| ||||||||||||||||||||||| Sbjct: 1195 taccacag-aaacaacctctctctccacctacacatcgactgttacttctacttttgttt 1253 Query: 926 ccacctcgtattcaatgtngtcctctttctatgg 959 ||| ||||||||||||| ||||||||||||||| Sbjct: 1254 ccagctcgtattcaatggtgtcctctttctatgg 1287 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6081 Number of Sequences: 1807 Number of extensions: 6081 Number of successful extensions: 28 Number of sequences better than 1.0e-20: 1 length of query: 959 length of database: 10,358,551 effective HSP length: 16 effective length of query: 943 effective length of database: 10,329,639 effective search space: 9740849577 effective search space used: 9740849577 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)