BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD02RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig934 1522 0.0
>3x_Contig934
Length = 4039
Score = 1522 bits (768), Expect = 0.0
Identities = 872/897 (97%), Gaps = 8/897 (0%)
Strand = Plus / Minus
Query: 45 gcttcgtcaatgcccttttctcggtgtatatgtacgttttctttatctagctatcattcg 104
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 2267 gcttcgtcaatgcccttttctctgtgtatatgtacgttttctttatctagttatcattcg 2208
Query: 105 agaagatgagtataatcgaaatatgtacaattaaaaccaaaacagacttaagggttttca 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2207 agaagatgagtataatcgaaatatgtacaattaaaaccaaaacagacttaagggttttca 2148
Query: 165 gtcacaataaatcaatagaactgataaagagaggtattattccattcgttttattattta 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 2147 gtcacaataaatcaatagaactgataaagagaggtattattccattcgttttattaataa 2088
Query: 225 ttgtttgacaagcacctacaatttcttagaaattagcgggtgatcgttcagggctgctct 284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2087 gtgtttgacaagcacctacaatttcttagaaattagcgggtgatcgttcagggctgctct 2028
Query: 285 ttctttccctggtccaactataatgatggccaattattttcggtctactttcaagtttag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2027 ttctttccctggtccaactataatgatggccaattattttcggtctactttcaagtttag 1968
Query: 345 gaagaccaccgttagcaccttgtttgtgcttactgttttggttattagtatactgacatg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1967 gaagaccaccgttagcaccttgtttgtgcttactgttttggttattagtatactgacatg 1908
Query: 405 gttcgatgctaataaatataagtcaaacttaccagatgataagtcatcaaattcattgtt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1907 gttcgatgctaataaatataagtcaaacttaccagatgataagtcatcaaattcattgtt 1848
Query: 465 agatgcagcttggcatgatttacaagtcattaccgagaaacctcatccttacacttctca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1847 agatgcagcttggcatgatttacaagtcattaccgagaaacctcatccttacacttctca 1788
Query: 525 tttcaatgataatgtacatgactatttgttgcaaagagtcgagcagatatcgaaaaagtc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1787 tttcaatgataatgtacatgactatttgttgcaaagagtcgagcagatatcgaaaaagtc 1728
Query: 585 aaagtttattgaggtatctgatgattctgctaatggtgtctctaaactctttcaacattt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1727 aaagtttattgaggtatctgatgattctgctaatggtgtctctaaactctttcaacattt 1668
Query: 645 ggacgttttcaacgattcatctaccgaaaccaggctggtttactacgagtcctcgaacat 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1667 ggacgttttcaacgattcatctaccgaaaccaggctggtttactacgagtcctcgaacat 1608
Query: 705 tttggttaaagtggaaggaaagtcaccacagttacctggccttttactatccgnccattt 764
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 1607 tttggttaaagtggaaggaaagtcaccacagttacctggccttctactatccgcccattt 1548
Query: 765 tgacttcgtgccaacttggatatggtgccacagatgatgggaaaggtgtggnatcacttc 824
||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1547 tgactcggtgccaac-tggatatggtgccacagatgatgggaaaggtgtggtatcacttc 1489
Query: 825 ttgcgttacttcagtattacttcggaaaccaaccagnaagaaaccatcggttttcaactt 884
||||||||||||||||||||| | ||||||||||| ||| ||||||| ||||||||| |
Sbjct: 1488 ttgcgttacttcagtattactcggaaaaccaaccagaaag-aaccatc-gttttcaac-t 1432
Query: 885 tcaacaatatggaagaaatttgggtttattggaagaccaccatatttcacttatagt 941
||||||||| |||| |||||||| ||||||| || |||||||| ||||||||||||
Sbjct: 1431 tcaacaataatgaag-aatttggg-ttattgggag-ccaccata-ttcacttatagt 1379
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7549
Number of Sequences: 1807
Number of extensions: 7549
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)