BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD03FM1.SCF screened BAC_end
(991 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1545 1475 0.0
>3x_Contig1545
Length = 12118
Score = 1475 bits (744), Expect = 0.0
Identities = 870/903 (96%), Gaps = 7/903 (0%)
Strand = Plus / Minus
Query: 87 cagcccatctagaagacgaatcggcaatcatagaaacgttcttaccttgatctctgaagt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11744 cagcccatctagaagacgaatcggcaatcatagaaacgttcttaccttgatctctgaagt 11685
Query: 147 attcagccaatgtaataccagtgtaaatggaggcctctctagcagcgacaggcatattag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11684 attcagccaatgtaataccagtgtaaatggaggcctctctagcagcgacaggcatattag 11625
Query: 207 aagtgtttgcaactttttttgtacgtttcatgataggttcctttctaccactaatttctg 266
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11624 aagtgtttgcaactaatgtggtacgtttcatgataggttcctttctaccactaatttctg 11565
Query: 267 tgaataattcagggaattccatcaaaacttcagccatttcgttacctctttcaccacagt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11564 tgaataattcagggaattccatcaaaacttcagccatttcgttacctctttcaccacagt 11505
Query: 327 tgtgaaccaaagtcatgtttgatagtaagaatttgtggtctgattcttcagctaaagtga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11504 tgtgaaccaaagtcatgtttgatagtaagaatttgtggtctgattcttcagctaaagtga 11445
Query: 387 caccaaaataatcagcagactcaattttttctaaatcgaaagagataggttgagccttat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11444 caccaaaataatcagcagactcaattttttctaaatcgaaagagataggttgagccttat 11385
Query: 447 gaattacatcaaccttttcgatgttcgaagtggaggtccaatttgaaacactcttcaaag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11384 gaattacatcaaccttttcgatgttcgaagtggaggtccaatttgaaacactcttcaaag 11325
Query: 507 catcacctgaaagagtcaatgtgtattcttggttttgtttcttaccggaaacgcggatac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11324 catcacctgaaagagtcaatgtgtattcttggttttgtttcttaccggaaacgcggatac 11265
Query: 567 ctaaagaacgcgccaatctcgcaataccgtcatgtgtcttgactgatagtgtttttagag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11264 ctaaagaacgcgccaatctcgcaataccgtcatgtgtcttgactgatagtgtttttagag 11205
Query: 627 cgactgtgtcatctagctttttggtttngagagtctacaatacctgccaagaaactttca 686
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 11204 cgactgtgtcatctagc-ttttggttttgagagtctacaatacctgccaagaaactttca 11146
Query: 687 cgaacattgatgttttcggacatcatgaacgatgggatgccgctagagaaagattcttga 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11145 cgaacattgatgttttcggacatcatgaacgatgggatgccgctagagaaagattcttga 11086
Query: 747 acgatcttggagacaagactgacttgagcgacctttctgcgtttatttttttgaactggc 806
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 11085 acgatcttggagacaagactgacttgagcgacctttctgcgtttattttcttgaactggc 11026
Query: 807 ttctg-taaattacaatgctagcattgccaacgggtctt-ccattagattgcacatggat 864
| || |||| |||||||||||| ||||||| |||||| |||||||||||||||| |||
Sbjct: 11025 tcttgagaaataacaatgctagcagtgccaac-ggtcttcccattagattgcacatcgat 10967
Query: 865 agactttttcgcaacattctttttatttaattgagcaaacagttgttggtagatattttg 924
|||||||| |||||| ||||||||| ||||||||| ||||||||| | ||||||| ||
Sbjct: 10966 agacttttcggcaacaatctttttatcgaattgagcagacagttgtt-gaagatattctg 10908
Query: 925 agttgttcttactcggaggagccaccgaaagc-ccccacatatatcaaaattgtggagcc 983
|||||| ||||| ||||||||||| ||||||| ||| ||| ||| ||||||||||||||
Sbjct: 10907 agttgtccttac-cggaggagccaacgaaagcacccaacagatacgaaaattgtggagcc 10849
Query: 984 aaa 986
|||
Sbjct: 10848 aaa 10846
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7342
Number of Sequences: 1807
Number of extensions: 7342
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 991
length of database: 10,358,551
effective HSP length: 16
effective length of query: 975
effective length of database: 10,329,639
effective search space: 10071398025
effective search space used: 10071398025
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)