BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD03RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1413 1649 0.0
>3x_Contig1413
Length = 8782
Score = 1649 bits (832), Expect = 0.0
Identities = 891/908 (98%), Gaps = 2/908 (0%)
Strand = Plus / Plus
Query: 42 cttgaaggtatcgttttcacacaattgaagactaccgatccatcataactctcttcaacg 101
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 4508 cttgaaggtatcgttttcacacaattgaagactaccgatccatcatcactgtcttcaacg 4567
Query: 102 ctaattaaatcagcaaattggaactcgttcgcggaattattaggctggatgagtgaaaaa 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4568 ctaattaaatcagcaaattggaactcgttcgcggaattattaggctggatgagtgaaaaa 4627
Query: 162 aagtttatctctgtcagtgataaatttatagcagatctcgaaaaaatccctccttttgtt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4628 aagtttatctctgtcagtgataaatttatagcagatctcgaaaaaatccctcccaaagtt 4687
Query: 222 tcccgtgatcaagagccctctgtgcaccttttaatcctaggaatgcgttatttgaggctt 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4688 ccccgtgatcaagagccctctgtgcaccttttaatcctaggaatgcgttatttgaggctt 4747
Query: 282 aaaaactatcctctagaaatgtttgaggaaagtgcagggttcatcaaatctatttcgaag 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4748 aaaaactatcctctagaaatgtttgaggaaagtgcagggttcatcaaatctatttcgaag 4807
Query: 342 ttctttgctccgtcccaaaacacttctattcgtttggcttatgctgaagtactaagtcaa 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4808 ttctttgctccgtcccaaaacacttctattcgtttggcttatgctgaagtactaagtcaa 4867
Query: 402 cttttattgccgttggctggagcaatgacagcagaggctaatcatccaacgtggatagaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4868 cttttattgccgttggctggagcaatgacagcagaggctaatcatccaacgtggatagaa 4927
Query: 462 gcaatgacgtcgatcctagctacctgtaaaaaacttcaaactgacagcaaatgctggaca 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4928 gcaatgacgtcgatcctagctacctgtaaaaaacttcaaactgacagcaaatgctggaca 4987
Query: 522 cttgctttcaagttgaccgtggcagtgttgtgtgtctcagatactgaattgttttccaaa 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4988 cttgctttcaagttgaccgtggcagtgttgtgtgtctcagatactgaattgttttccaaa 5047
Query: 582 aactggttatctttgatcgagaagaacgttaccaaaattaaatctaagtcattagaagat 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5048 aactggttatctttgatcgagaagaacgttaccaaaattaaatctaagtcattagaagat 5107
Query: 642 cgtgttgctttctccatgggcctttcaaggttgatatgggtctatcttttcagatgtact 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5108 cgtgttgctttctccatgggcctttcaaggttgatatgggtctatcttttcagatgtact 5167
Query: 702 gaaaccttaaacaatacagacaaaacgttgacaaaattgttctcgttatttttgagttca 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5168 gaaaccttaaacaatacagacaaaacgttgacaaaattgttctcgttatttttgagttca 5227
Query: 762 aagaagaaagagaactggatcacgacagatatggatatcattaaccctctatgtgatgtt 821
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5228 aagaagaaggagaactggatcacgacagatatggatatcataaaccctctatgtgatgtt 5287
Query: 822 ttcgtggactgttggatacgttcatcctaccttcgtatttgaaaaggttcttctacattt 881
||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5288 ttcgt-gactgtgggatacgttcatcctaccttcgtatttgaaaatgttcttctacattt 5346
Query: 882 gattgaaatcctcctttaaggggacgaatttagagaatattgcacatgtaaaattggaac 941
|| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||
Sbjct: 5347 ga-tgaaatcctcctttaatgggacgaatttagagaatattgcacatgaaaaattgatac 5405
Query: 942 tagtcatc 949
||||||||
Sbjct: 5406 tagtcatc 5413
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7345
Number of Sequences: 1807
Number of extensions: 7345
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)