BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD04FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1340 1596 0.0
>3x_Contig1340
Length = 7156
Score = 1596 bits (805), Expect = 0.0
Identities = 853/864 (98%), Gaps = 4/864 (0%)
Strand = Plus / Plus
Query: 86 tactggatccactaatcctaccataggtaggaacaccgtttgtctggaagaagtcttgat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4057 tactggatccactaatcctaccataggtaggaacaccgtttgtctggaagaagtcttgat 4116
Query: 146 tacagcagctttacccttagcggcattatctaaattgacattaccgccttgagtgtcaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4117 tacagcagctttacccttagcggcattatctaaattgacattaccgccttgagtgtcaat 4176
Query: 206 ctcgttggaatcctgttattcatccatatccataatttcaacaacattcgccactaaata 265
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4177 ctcgttggaatcctgtaattcatccatatccataatttcaacaacattcgccactaaata 4236
Query: 266 cggtaattgtttgttattcttgatcttttcttgattatccttaatcttctctagcatctg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4237 cggtaattgtttgttattcttgatcttttcttgattatccttaatcttctctagcatctg 4296
Query: 326 actgttttcatgagacaaacgttgtagttcggatctgaatatcctaatttcgttatctag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4297 actgttttcatgagacaaacgttgtagttcggatctgaatatcctaatttcgttatctag 4356
Query: 386 caacttcgcacgagtagttagttcggaagctgatagattgaaaaattcttgatcgatatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4357 caacttcgcacgagtagttagttcggaagctgatagattgaaaaattcttgatcgatatc 4416
Query: 446 atcatcatctggctgactttggttattcaattcttctaacgtagacatcacttattcgtg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4417 atcatcatctggctgactttggttattcaattcttctaacgtagacatcacttattcgtg 4476
Query: 506 tttatatgtatgtctattttctttgccaatctcaaacaatgtttcctcaatataatacct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4477 tttatatgtatgtctattttctttgccaatctcaaacaatgtttcctcaatataatacct 4536
Query: 566 ataaaaacgttgtgcttttccagctcgcttctctttacaagggttttggtaccaattgca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4537 ataaaaacgttgtgcttttccagctcgcttctctttacaagggttttggtaccaattgca 4596
Query: 626 cagtctagtattaatcacagacagatggactaccgtgttcttctcacttttaaatcgtct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4597 cagtctagtattaatcacagacagatggactaccgtgttcttctcacttttaaatcgtct 4656
Query: 686 tttgccaccagaacctggtatttcagaacatatacattgattaaatgaatttgttaagct 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4657 tttgccaccagaacctggtatttcagaacatatacattgattaaatgaatttgttaagct 4716
Query: 746 tttaagatcccattgaaaaaaagggcagaaaataaaaatatcc-ggtaacgaaatattta 804
|| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||
Sbjct: 4717 ttaaagatcccattgaaaaaaagggcag-aaattaaaatatccgggtaacgaaatattta 4775
Query: 805 tttcattaaaatcgatatactatttacttataatatacgtatagnttagtggtatagatc 864
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4776 tttcattaaaatcgatatactatttacttataatatacgtatagtttagtggtatagatc 4835
Query: 865 tatggtacagtggtggggtgtggt-ataataatgatattcaatcattaattctctagctc 923
|||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 4836 tatggtacagtggt-gggtgtggtaataataatgatatcaaatcattaattctctagctc 4894
Query: 924 ctttttcaattccttggagaaatc 947
||||||||||||||||| ||||||
Sbjct: 4895 ctttttcaattccttggtgaaatc 4918
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8301
Number of Sequences: 1807
Number of extensions: 8301
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)