BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD04RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1210 1558 0.0
>3x_Contig1210
Length = 6392
Score = 1558 bits (786), Expect = 0.0
Identities = 834/845 (98%), Gaps = 4/845 (0%)
Strand = Plus / Minus
Query: 72 aaaaaaagtaagaagagaaaaagttgtaaaacccttcagtaatactaaaagagtcatcaa 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5436 aaaaaaagtaagaagagaaaaagttgtaaaacccttcagtaatactaaaagagtcatcaa 5377
Query: 132 agaaaccgtgtcctaccacgtcaatagtttcggttaacatctttaattaaaatgggaggt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5376 agaaaccgtgtcctaccacgtcaatagtttcggttaacatctttaattaaaatgggaggt 5317
Query: 192 tggtcataacaaatatcattatatcttggtagattttcgatggaactttatcattcttct 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5316 tggtcataacaaatatcattatatcttggtagattttcgatggaactttatcattcttct 5257
Query: 252 cgaacggaaggaactaaagagagtagtgtctgggcatgtttcaatgatatcgtatctctc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5256 cgaacggaaggaactaaagagagtagtgtctgggcatgtttcaatgatatcgtatctctc 5197
Query: 312 agctaattacacttattgctttggttcaccaccttgttggttagaagcgtcgttcttgta 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5196 agctaattacacttattgctttggttcaccaccttgttggttagaagcgtcgttcttgta 5137
Query: 372 catttgttcgaacaacttcatggaagcggtttgtaattcttcagtcttggtcttcaactc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5136 catttgttcgaacaacttcatggaagcggtttgtaattcttcagtcttggtcttcaactc 5077
Query: 432 ttcagcgtcgacttcttcaccggcttgaactctagcgaccaattctctcaaagcagcgac 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5076 ttcagcgtcgacttcttcaccggcttgaactctagcgaccaattctctcaaagcagcgac 5017
Query: 492 ttggtccttaaccttttgagcttcagccttgtccaatttttcttcgaattccttcaaaga 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5016 ttggtccttaaccttttgagcttcagccttgtccaatttttcttcgaattccttcaaaga 4957
Query: 552 agcttcggtatcgttggccaattggtcacccttgttggcggtttcaatagccttctttct 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4956 agcttcggtatcgttggccaattggtcacccttgttggcggtttcaatagccttctttct 4897
Query: 612 ggtttcatcttgttctctgaacttttcagcatcgctaaccatttgctcgatttcagattc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4896 ggtttcatcttgttctctgaacttttcagcatcgctaaccatttgctcgatttcagattc 4837
Query: 672 ggacaaaccggaagaaccagcaacagtgatggaagcatccttgttggaagccttgtctct 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4836 ggacaaaccggaagaaccagcaacagtgatggaagcatccttgttggaagccttgtctct 4777
Query: 732 agcagagacgttgatgataccatcggcatcaatatcgaaagaaacttcgatttgttggac 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4776 agcagagacgttgatgataccatcggcatcaatatcgaaagaaacttcgatttgtgggac 4717
Query: 792 accctttggagctggtgggatacctagac-aagtgaagttaccgatcaacttgttgtctt 850
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 4716 accctttggagctggtgggatacc-agacaaagtgaagttaccgatcaacttgttgtctc 4658
Query: 851 tgaccaattttcttt-accttggaaaactcttgatttcacggnaggtttgaccagcagca 909
||||||||| ||||| |||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 4657 tgaccaattctctttcaccttggaaaactc-tgatttccacggaggtttgaccagcagca 4599
Query: 910 gcagt 914
|||||
Sbjct: 4598 gcagt 4594
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7929
Number of Sequences: 1807
Number of extensions: 7929
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)