BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD06RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1560 0.0
>3x_Contig1652
Length = 14842
Score = 1560 bits (787), Expect = 0.0
Identities = 883/907 (97%), Gaps = 6/907 (0%)
Strand = Plus / Plus
Query: 38 cttgctaagttggaggaatcgaataa-gaaaaggagaagcaacgtaagaacgacttcttc 96
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 12563 cttgctaagttggaggaatcgaagaaagaaaaggagaagcaacgtaagaaggacttcttc 12622
Query: 97 tccaaaaacggtaaaaaaagacaattcaacgacaatgacacaagtgatgttatgtcttcc 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12623 tccaaaaacggtaaaaaaagacaattcaacgacaatgacacaagtgatgttatgtcttcc 12682
Query: 157 aagaaaaggaaataaactatgtattttaacctatttacattgcataatttgaatgattta 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 12683 aagaaaaggaaataaactatgtattttaacctatttacattgcataatttgaatgataga 12742
Query: 217 ttataaagtaattgttaagaaccaaaatgaactactgtattatgttaagagtcgcatttg 276
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 12743 gtataaagtaattgttaagaaccaaaatgaactactgtatta-gttaagagtcgcatttg 12801
Query: 277 gagttgattctgagctggagattttctatgttaatgcaattctaagagaccatgagattc 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12802 gagttgattctgagctggagattttctatgttaatgcaattctaagagaccatgagattc 12861
Query: 337 tgaaacatagctaagtattttatgcatatatgattatagttattcttctccatgcttatt 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12862 tgaaacatagctaagtattttatgcatatatgattatagttattcttctccatgcttatt 12921
Query: 397 aggtgatatttgcagttattatatatcgttagtagcgcttgcttaactacttaaatatat 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12922 aggtgatatttgcagttattatatatcgttagtagcgcttgcttaactacttaaatatat 12981
Query: 457 tcagatagccacttgaaggcttcagagtaaccagacttcatgacaacggaacacatgaac 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12982 tcagatagccacttgaaggcttcagagtaaccagacttcatgacaacggaacacatgaac 13041
Query: 517 aactcgataggtctttgaccttcaattttggtatatccagttgtgttcatcaaacccaat 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13042 aactcgataggtctttgaccttcaattttggtatatccagttgtgttcatcaaacccaat 13101
Query: 577 gcagctctcaattcagtttcagaaacggcacttggagagtcaatcttgttacccaagaca 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13102 gcagctctcaattcagtttcagaaacggcacttggagagtcaatcttgttacccaagaca 13161
Query: 637 gcaaatggaacgttgtccaattccttgatttggaacaaagcatccaattcaatacgtgct 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13162 gcaaatggaacgttgtccaattccttgatttggaacaaagcatccaattcaatacgtgct 13221
Query: 697 tcgttaaatctctctgggtcagcagcatccactaggaacacaataccattaacttctggg 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13222 tcgttaaatctctctgggtcagcagcatccactaggaacacaataccattaacttctggg 13281
Query: 757 aaataatccttccacaatctacgtgcttgcaaaagtccacctaaatcaaaagtggggatt 816
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct: 13282 aaataatccttccacaatctacgtgcttgcaaatgtccacctaaatcaaaagtggtgaat 13341
Query: 817 ttgatattaccgatcgccaattcttcaaaatttgggtgccaagtttgtttgcaaagtaac 876
||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||| |
Sbjct: 13342 ttgatattaccgatcgccaattcttcagaagttgggtgccaag-ttggttgcaaagtagc 13400
Query: 877 taatcttatcgtt-tttaacatatgttacaaactagtctttacagcatttgtctaaacct 935
||||| ||||||| || ||||||||| |||| ||||||| ||||| ||||||||||||
Sbjct: 13401 taatc-tatcgttcttcaacatatgtaacaaggtagtcttaccagca-ttgtctaaacct 13458
Query: 936 aagaaca 942
|||||||
Sbjct: 13459 aagaaca 13465
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8219
Number of Sequences: 1807
Number of extensions: 8219
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)