BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD07RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1544 0.0
>3x_Contig1795
Length = 38452
Score = 1544 bits (779), Expect = 0.0
Identities = 839/854 (98%), Gaps = 4/854 (0%)
Strand = Plus / Minus
Query: 42 cttacccaatgtcaaagttgtataggacctcaagattttattatttttcagtgtttcgga 101
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 12045 cttacccaatgtcaaagttgtattagacctcaagattttattctttttcagtgtttcgga 11986
Query: 102 atcagatatgataccagcagtcgatggaaccacaccatcttcttctaatgtttgtttgat 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11985 atcagatatgataccagcagtcgatggaaccacaccatcttcttctaatgtttgtttgat 11926
Query: 162 ggtggtagccctgtggataatatttatttccaatttaagtgctaagactgtttttaagaa 221
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 11925 ggtggtagccctgtggataatatttatttccaatttaagtgctaagactgctgcaaagaa 11866
Query: 222 agttgatgtgatgaacaaatcaaatcctaataatacattttcagaagaagcaaaagttcg 281
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 11865 agttgatgtgatgaacaaatcaaatcctaataatacagca-cagaagaagcaaaagttcg 11807
Query: 282 aaagagcggataaggacgaagcatacacggcacaaccaccaaaagcgataagacataaca 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11806 aaagagcggataaggacgaagcatacacggcacaaccaccaaaagcgataagacataaca 11747
Query: 342 aatgatcttgaacgagacgttgaccttcgttcaacattgcatcatagacgacttgataag 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11746 aatgatcttgaacgagacgttgaccttcgttcaacattgcatcatagacgacttgataag 11687
Query: 402 tcgttaccttttgtgagacatcgaatctcttgaactggtccactacgtacttggccaact 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11686 tcgttaccttttgtgagacatcgaatctcttgaactggtccactacgtacttggccaact 11627
Query: 462 taatcttatgcttgaaaccaacaataaccacaacgaatggaacaccttcaatcaaactca 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11626 taatcttatgcttgaaaccaacaataaccacaacgaatggaacaccttcaatcaaactca 11567
Query: 522 gtgcggttactggtttgttgcaaatcttttgagttgcgtaaagtgcgacaaaaaaagcag 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11566 gtgcggttactggtttgttgcaaatcttttgagttgcgtaaagtgcgacaaaaaaagcag 11507
Query: 582 ttcctgagttgaccacagcagctaaagcaatccagaatttagatccagtaactcgcattt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11506 ttcctgagttgaccacagcagctaaagcaatccagaatttagatccagtaactcgcattt 11447
Query: 642 cgatgaataaagatatcaaagtatatgccattgcaacgtaagcagtaccaacgatgaaaa 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11446 cgatgaataaagatatcaaagtatatgccattgcaacgtaagcagtaccaacgatgaaaa 11387
Query: 702 tatcgaacggttctgcagagttaattctgttaaaaagatcctgatataccgagataacaa 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11386 tatcgaacggttctgcagagttaattctgttaaaaagatcctgatataccgagataacaa 11327
Query: 762 aaatcttgacgtcgtgtagcttgtatctgtgagctcttagagtccactcagtctcatctt 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11326 aaatcttgacgtcgtgtagcttgtatctgtgagctcttagagtccactcagtctcatctt 11267
Query: 822 ctgatttc-atgtcntagagacattgaactcatctttc-ataaatattc-acagatccat 878
|||||||| ||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 11266 ctgatttcaatgtcttagagacattgaactcatctttcaataaatattcaacagatccat 11207
Query: 879 tttggtagacgctt 892
||||||||||||||
Sbjct: 11206 tttggtagacgctt 11193
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7708
Number of Sequences: 1807
Number of extensions: 7708
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)