BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD08FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1653 0.0
>3x_Contig1536
Length = 11572
Score = 1653 bits (834), Expect = 0.0
Identities = 867/875 (99%), Gaps = 3/875 (0%)
Strand = Plus / Plus
Query: 90 gaatatgacttaactctcactcttatttgaatacacttagacaatacattagaaacatct 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6246 gaatatgacttaactctcactcttatttgaatacacttagacaatacattagaaacatct 6305
Query: 150 gctgtaaaccgtatgtatgatatatgtacttgcattaaagacttttttcaaggctgatat 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6306 gctgtaaaccgtatgtatgatatatgtacttgcattaaagacttttttcaaggctgatat 6365
Query: 210 aaatttgaaaaaggaagcatccagacaaaagacagaagtaccaaccaacccacatacaac 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6366 aaatttgaaaaaggaagcatccagacaaaagacagaagtaccaaccaacccacatacaac 6425
Query: 270 aagaaagaaagtaacgaacataccttcttgtgttggaacgatcctattcactctgtaacg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6426 aagaaagaaagtaacgaacataccttcttgtgttggaacgatcctattcactctgtaacg 6485
Query: 330 gattgcttgaccactggttattgcattgatgtacaattgttccatgaaataaggtcataa 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6486 gattgcttgaccactggttattgcattgatgtacaattgttccatgaaataaggtcataa 6545
Query: 390 tttcgtttgttttagttacgtttgagaacgcatacgaaggagatgtcaactgaggccacg 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6546 tttcgtttgttttagttacgtttgagaacgcatacgaaggagatgtcaactgaggccacg 6605
Query: 450 agctctgatgcatcggtgttctccaatatgcattcggtggatagcacaagggataataca 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6606 agctctgatgcatcggtgttctccaatatgcattcggtggatagcacaagggataataca 6665
Query: 510 agggataatacaagggataatacacccatgaatgaaggtgacactcaaggtaagcgtatg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6666 agggataatacaagggataatacacccatgaatgaaggtgacactcaaggtaagcgtatg 6725
Query: 570 acgaagagtactatggctttaattgaagagtctatgaagtatgatatgcgcagtgagtat 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6726 acgaagagtactatggctttaattgaagagtctatgaagtatgatatgcgcagtgagtat 6785
Query: 630 tttcttcccatgacatttctaagagaacgtcggaaacctgcaagagttgagagcgacgag 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6786 tttcttcccatgacatttctaagagaacgtcggaaacctgcaagagttgagagcgacgag 6845
Query: 690 gaagataaactagcggaagtaaaatcgaaaaggcgcgtttcgaagaaggaccaggtcaag 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6846 gaagataaactagcggaagtaaaatcgaaaaggcgcgtttcgaagaaggaccaggtcaag 6905
Query: 750 gcggatattcattcgacgaanattaagaaaactggccgcccttccaatgtcaaagctgga 809
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 6906 gcggatattcattcgacgaaaattaagaaaactggccgcccttccaatgtcaaagctgga 6965
Query: 810 gcgaagaacacttccaaagttaccaagcagaggtcgaccaaatcgcaagttttcaggc-a 868
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 6966 gcgaagaacacttccaaagttaccaagcagaggtcgaccaaatcgcaag-tttcaggcaa 7024
Query: 869 aaaaagagccagatccatctctgatggnaaagtgtcatccatagatgcgagccgcagtct 928
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7025 aaaaagagccagatccatctctgatgggaaagtgtcatccatagatgcgagccgcagtct 7084
Query: 929 caaagccttcagnaag-aacatagcagtcatgctg 962
|||||||| || ||| ||||||||||||||||||
Sbjct: 7085 caaagcctccaagaagaaacatagcagtcatgctg 7119
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5601
Number of Sequences: 1807
Number of extensions: 5601
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)