BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD08RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1685 0.0
>3x_Contig1652
Length = 14842
Score = 1685 bits (850), Expect = 0.0
Identities = 882/890 (99%), Gaps = 2/890 (0%)
Strand = Plus / Plus
Query: 44 cttgctaagttggaggaatcgaataaagaaaaggagaagcaacgtaagacggacttcttc 103
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 12563 cttgctaagttggaggaatcgaagaaagaaaaggagaagcaacgtaagaaggacttcttc 12622
Query: 104 tccaaaaacggtaaaaaaagacaattcaacgacaatgacacaagtgatgttatgtcttcc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12623 tccaaaaacggtaaaaaaagacaattcaacgacaatgacacaagtgatgttatgtcttcc 12682
Query: 164 aagaaaaggaaataaactatgtattttaacctatttacattgcataatttgaatgattta 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 12683 aagaaaaggaaataaactatgtattttaacctatttacattgcataatttgaatgataga 12742
Query: 224 gtataaagtaattgttaagaaccaaaatgaactactgtattatttaagagtcgcatttgg 283
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 12743 gtataaagtaattgttaagaaccaaaatgaactactgtattagttaagagtcgcatttgg 12802
Query: 284 agttgattctgagctggagattttctatgttaatgcaattctaagagaccatgagattct 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12803 agttgattctgagctggagattttctatgttaatgcaattctaagagaccatgagattct 12862
Query: 344 gaaacatagctaagtattttatgcatatatgattatagttattcttctccatgcttatta 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12863 gaaacatagctaagtattttatgcatatatgattatagttattcttctccatgcttatta 12922
Query: 404 ggtgatatttgcagttattatatatcgttagtagcgcttgcttaactacttaaatatatt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12923 ggtgatatttgcagttattatatatcgttagtagcgcttgcttaactacttaaatatatt 12982
Query: 464 cagatagccacttgaaggcttcagagtaaccagacttcatgacaacggaacacatgaaca 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12983 cagatagccacttgaaggcttcagagtaaccagacttcatgacaacggaacacatgaaca 13042
Query: 524 actcgataggtctttgaccttcaattttggtatatccagttgtgttcatcaaacccaatg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13043 actcgataggtctttgaccttcaattttggtatatccagttgtgttcatcaaacccaatg 13102
Query: 584 cagctctcaattcagtttcagaaacggcacttggagagtcaatcttgttacccaagacag 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13103 cagctctcaattcagtttcagaaacggcacttggagagtcaatcttgttacccaagacag 13162
Query: 644 caaatggaacgttgtccaattccttgatttggaacaaagcatccaattcaatacgtgctt 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13163 caaatggaacgttgtccaattccttgatttggaacaaagcatccaattcaatacgtgctt 13222
Query: 704 cgttaaatctctctgggtcagcagcatccactaggaacacaataccattaacttctggga 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13223 cgttaaatctctctgggtcagcagcatccactaggaacacaataccattaacttctggga 13282
Query: 764 aataatccttccacaatctacgtgcttgcaaatgtccacctaaatcaaaagtggtgaatt 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13283 aataatccttccacaatctacgtgcttgcaaatgtccacctaaatcaaaagtggtgaatt 13342
Query: 824 tgatattaccgatcgccaattcttcagaagttgggtgcaaagttggttgcaaagtagcta 883
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 13343 tgatattaccgatcgccaattcttcagaagttgggtgccaagttggttgcaaagtagcta 13402
Query: 884 atctatcgttccttcaacatatgtaacaaggtagttcttaccagcattgt 933
|||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 13403 atctatcgtt-cttcaacatatgtaacaaggtag-tcttaccagcattgt 13450
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7830
Number of Sequences: 1807
Number of extensions: 7830
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)