BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD09FM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig791 1515 0.0
>3x_Contig791
Length = 3989
Score = 1515 bits (764), Expect = 0.0
Identities = 866/892 (97%), Gaps = 6/892 (0%)
Strand = Plus / Minus
Query: 86 atcagatccatatttcagcacaatggtatcgagggccgatatcgttaaaagtatacccta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3606 atcagatccatatttcagcacaatggtatcgagggccgatatcgttaaaagtatacccta 3547
Query: 146 tcttgtgttgggaacaccctctactttattcgaactaaaagacaagaagttcacaatacc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3546 tcttgtgttgggaacaccctctactttattcgaactaaaagacaagaagttcacaatacc 3487
Query: 206 cagcaatattccgaattgttaaagccaacagttgcatgatatcgttgaagcaggcttact 265
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3486 cagcaatattccgaacggagaaagccaacagttgcatgatatcgttgaagcaggcttact 3427
Query: 266 ttacttgcaccttcaaattagagtggaatatcttaaaaaacatgttaccaccagtacact 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3426 ttacttgcaccttcaaattagagtggaatatcttaaaaaacatgttaccaccagtacact 3367
Query: 326 aaaagtagcatttttgacattgattcaaagtaaacttcgagattatagtaatttcgtcaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3366 aaaagtagcatttttgacattgattcaaagtaaacttcgagattatagtaatttcgtcaa 3307
Query: 386 caatttctcatcccacttacatccactcgatccattatgttttacatatcaacacctcta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3306 caatttctcatcccacttacatccactcgatccattatgttttacatatcaacacctcta 3247
Query: 446 tcctgaagtactaaaactaaggacatatatggaatatattgaaaactttgaaaaaagcag 505
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3246 tcctgaagtactaaaactaaggacatatatggaatatattgataactttgaaaaaagcag 3187
Query: 506 tgcagagggattactatctgtatgccagttacaaaaaagtaatggtgatccagtactcga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3186 tgcagagggattactatctgtatgccagttacaaaaaagtaatggtgatccagtactcga 3127
Query: 566 gaaatttgcatctgatgcgttagagcgtcttttacaaccctacatgaagaacatatgcga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3126 gaaatttgcatctgatgcgttagagcgtcttttacaaccctacatgaagaacatatgcga 3067
Query: 626 ttggttgattgatggaaaactggattcaaatgttagtagtgacttttttgtt-aaaatga 684
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3066 ttggttgattgatggaaaactggattcaaatgttagtagtgacttttttgttcaaaatga 3007
Query: 685 cgagaaagaaccattgggattggtattcttgccacatgaaattccaaaatttataccgtc 744
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3006 cgagaaagaaccattgggattggtattcttgccacagaaaattccaaaatttataccgtc 2947
Query: 745 tttagtggccaaaaaaatattacattattggaaagtcccttcgatatcttgaacattgct 804
||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||
Sbjct: 2946 tttagtggccaaaaaaata-tacattattggcaagtccctccgatatctcgaacattgct 2888
Query: 805 gcagcgaatttgaatggattggaaaatttgcaaattagtattcattgcaatataggctat 864
|||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 2887 gcagcgaagttgaatggattgg-aaatttgcaaataagtattcattgcaatataggctat 2829
Query: 865 taggccctttaatggatcacaaatttttcgaaatggttaaccaccaatattggtgaaatt 924
||||||||| |||||||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct: 2828 taggcccttcaatggatcacaaatttttcgaattggttaaccagcaata-tggtgaaatt 2770
Query: 925 tacccctattatc-acacccctttacgatcgaaattttattattccgagact 975
||| ||| |||| ||||| | |||||||||||||||||||||| |||||||
Sbjct: 2769 aaccacta-tatcaacaccacattacgatcgaaattttattatttcgagact 2719
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7826
Number of Sequences: 1807
Number of extensions: 7826
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)