BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD09RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1377 1528 0.0
>3x_Contig1377
Length = 8397
Score = 1528 bits (771), Expect = 0.0
Identities = 874/901 (97%), Gaps = 6/901 (0%)
Strand = Plus / Minus
Query: 47 aggtaatcaaatcanttaaacattcaaacttgtgcacaccatcagcagtataaatattgg 106
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6488 aggtaatcaaatcattgaaacattcaaacttgtgcacaccatcagcagtataaatattgg 6429
Query: 107 tggtgtactccgaaacagacctgtacaaatgcgattgtagaggttgggcagcgcattctt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6428 tggtgtactccgaaacagacctgtacaaatgcgattgtagaggttgggcagcgcattctt 6369
Query: 167 ctgatagagaaacgtgttgtataagcgttttcaagtccacagaatgcttattattgaatt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6368 ctgatagagaaacgtgttgtataagcgttttcaagtccacagaatgcttattattgaatt 6309
Query: 227 ccaggatgttactcatggtatcatcactgattttggtacggtcaaattctttatcgagac 286
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 6308 ccaggatgttactcatggtatcatcactgaatctggtacggtcaaattctttatcgagac 6249
Query: 287 agcatatcataaattggtccaactgtatgttcctggcatactccattgcacgttcaacag 346
||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6248 agcattttataaattggtccaactgtatgtacctggcatactccattgcacgttcaacag 6189
Query: 347 gaataccaacactgatgaaaaacttgatatcattcttactcaagaagtcatactgtgata 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6188 gaataccaacactgatgaaaaacttgatatcattcttactcaagaagtcatactgtgata 6129
Query: 407 aagtgttcaagggtccgaagaacacattgttactcaactgttggggtttcatctggttca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6128 aagtgttcaagggtccgaagaacacattgttactcaactgttggggtttcatctggttca 6069
Query: 467 acgtatgagccaatgcataattattatggtgagacatgtctagttgcttttttccataaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6068 acgtatgagccaatgcataattattatggtgagacatgtctagttgcttttttccataaa 6009
Query: 527 gaatatcggaccacagattgtaagtagggtgaaagattgagacagagagcaaaacacagg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6008 gaatatcggaccacagattgtaagtagggtgaaagattgagacagagagcaaaacacagg 5949
Query: 587 ctagttgttaccaatactcgaattatacaaatgaggttcaatgccagttagtaagctcac 646
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5948 ctagttgttaccaatactcgatttatacaaatgaggttcaatgccagttagtaagctcac 5889
Query: 647 tccgctcttgtcctgagtcaaagccttacgtgagtcgcattgatgaggttagtattcttt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5888 tccgctcttgtcctgagtcaaagccttacgtgagtcgcattgatgaggttagtattcttt 5829
Query: 707 tttgccaaaagatcaaaaatctgaaaaatag-aaaatgaatttttcaagctctaaaggct 765
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5828 tttgccaaaagatcaaaaatctgaaaaatagaaaaatgaatttttcaagctctaaaggct 5769
Query: 766 tattctagtaaagtaatggaaatggtgtaagctttgtcaaaggctttaatgctggtacaa 825
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 5768 tattctagtaaagtaatggaaatggtgtaagctcggtcaaaggctttaatgctggtacaa 5709
Query: 826 cggatgcngaattgag-actaaaactacgacaaaaatcagacaatcagattataattgta 884
|||| || ||| |||| || ||||| |||||||||||||||||||||||| |||| ||||
Sbjct: 5708 cggaggcggaa-tgagaacaaaaacaacgacaaaaatcagacaatcagataataa-tgta 5651
Query: 885 agcctg-aagctgattgaaagtgcatgttttatatcgtcgaagcattctttgttttactg 943
| ||| |||||||||| |||||||||||| || |||||||||||| ||||||||||||
Sbjct: 5650 aagctgaaagctgattgtaagtgcatgtttaat-tcgtcgaagcatcgtttgttttactg 5592
Query: 944 t 944
|
Sbjct: 5591 t 5591
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7178
Number of Sequences: 1807
Number of extensions: 7178
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)