BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD10RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig213 1285 0.0
>3x_Contig213
Length = 1583
Score = 1285 bits (648), Expect = 0.0
Identities = 690/703 (98%), Gaps = 1/703 (0%)
Strand = Plus / Minus
Query: 42 gcttactgatactaattatcttgctagttgccttatcggtatagcattactttggccgtg 101
|||||||||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct: 703 gcttactgatactaattatcttgcatttttccttatcggtattgcattactttggccgtg 644
Query: 102 gaactcattcttaagtgcgtcattatatttccagcatgatgtatttcaagacacgtcggt 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gaactcattcttaagtgcgtcattatatttccagcatgatgtatttcaagacacgtcggt 584
Query: 162 gtatgcaaggatttacatcagtaccatgatgacagttagtacgatatcatcggtactgtc 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gtatgcaaggatttacatcagtaccatgatgacagttagtacgatatcatcggtactgtc 524
Query: 222 taacataattttatccaaaattcaacatcattacacttttttaattgttagtggattgtt 281
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 523 taacataattttatccaaaattcaacatcattacactgaaagaattgttagtggattgtt 464
Query: 282 cttcgaaattattgtatttacttcattatgtggtgcggtactattccatcgttggttatc 341
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 463 cttcgaaattattgtatttacttcattatgtggtgtggtactattccatcgttggttatc 404
Query: 342 ccacttactgtcattcatcatgattatgtttctagtgcttgtcagttccgttgcaactgc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ccacttactgtcattcatcatgattatgtttctagtgcttgtcagttccgttgcaactgc 344
Query: 402 actctctcaaaccggtgtcatggctatggctaacgttttcggaccagaatacaatcatgc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 actctctcaaaccggtgtcatggctatggctaacgttttcggaccagaatacaatcatgc 284
Query: 462 agtgatggtgggacaagccgtcgcaggggtactaccgtcgctagtgctcttcatggtctc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agtgatggtgggacaagccgtcgcaggggtactaccgtcgctagtgctcttcatggtctc 224
Query: 522 gatcttcaatcaaaaacaggaacaaacagcgacaggtatcaatctatatttcttatccac 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gatcttcaatcaaaaacaggaacaaacagcgacaggtatcaatctatatttcttatccac 164
Query: 582 tagtgtcatgt-cgtttgcatccatcgtggcatataaaaaaagtgatatacctatcattg 640
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tagtgtcatgtgcgtttgcatccatcgtggcatataaaaaaagtgatatacctatcattg 104
Query: 641 gaggagatatggctcagcggacagctgatgagcctaaggtttacgtcccattcaaagtgc 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 gaggagatatggctcagcggacagctgatgagcctaaggtttacgtcccattcaaagtgc 44
Query: 701 ttttcctgaaattaaggtaccttgngctctctatatttaccat 743
|||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 43 ttttcctgaaattaaggtaccttgtgctctctatatttaccat 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6685
Number of Sequences: 1807
Number of extensions: 6685
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)