BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD11FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig757 1552 0.0
>3x_Contig757
Length = 2436
Score = 1552 bits (783), Expect = 0.0
Identities = 851/867 (98%), Gaps = 5/867 (0%)
Strand = Plus / Plus
Query: 86 tgggtagacaacagaacgttgaggtgaaattacctaatttcgctagaaatattgaaatta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgggtagacaacagaacgttgaggtgaaattacctaatttcgctagaaatattgaaatta 313
Query: 146 acttgccatcgatcgatgttagcactgcaagccaaaatcaattaaggactttcttgacaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acttgccatcgatcgatgttagcactgcaagccaaaatcaattaaggactttcttgacaa 373
Query: 206 agaacaccacccattatttgttgagcagaacagcattagacttcggctcaactgaagcta 265
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agaacaccacccagtatttgttgagcagaacagcattagacttcggctcaactgaagcta 433
Query: 266 agctgcaacagtttgttgaaaactatcaagccgttttagcgcaaaactcggttgctgaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agctgcaacagtttgttgaaaactatcaagccgttttagcgcaaaactcggttgctgaca 493
Query: 326 tttacgacaaatacgtatcccaatacaaacagctgttaactcaaaaggctactgaatctg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tttacgacaaatacgtatcccaatacaaacagctgttaactcaaaaggctactgaatctg 553
Query: 386 aaacgacagaagaagctcatgcagatgcacaagcagaagaaacgaaataaaggatagact 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaacgacagaagaagctcatgcagatgcacaagcagaagaaacgaaataaaggatagact 613
Query: 446 tatccgtaaccaatatttcccagaaccgttcatgtatatatatataagaatcaacgtcag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tatccgtaaccaatatttcccagaaccgttcatgtatatatatataagaatcaacgtcag 673
Query: 506 ttaagaatattactagaaattcaaaaaacattaacaaaatgaccataattcataaagaaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttaagaatattactagaaattcaaaaaacattaacaaaatgaccataattcataaagaaa 733
Query: 566 ctcacacaatatacttctattatataattattgatgtgccgtcacggattcatcgcaaat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ctcacacaatatacttctattatataattattgatgtgccgtcacggattcatcgcaaat 793
Query: 626 tgagtaaat-gttcgtcaattagcgcctggtaccatgtcactcccgctagccaactcggg 684
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tgagtaaatcgttcgtcaa-tagcgcctggtaccatgtcactcccgctagccaactcggg 852
Query: 685 cactgagtttgttcgatctgcaaggaaatcaccgtcaacgagttttccattcattc-ttt 743
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 853 cactgagtttgttcgatctgcaaggaaatcaccgtcaacgagttttcca-tcattctttt 911
Query: 744 taagaatttcaattttggtgaaattattcaaaagctgacataaataccaatcgatgatct 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 taagaatttcaattttggtgaaattattcaaaagctgacataaataccaatcgatgatct 971
Query: 804 cgcagttcctgtgatccaacggaaatctattggcaaataacggtatactttgaggtatca 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 cgcagttcctgtgatccaacggaaatctattggcaaataacggtatactttgaggtatca 1031
Query: 864 aatcaccaataatgacaggaggagctaggggagcttcaggggaagaaaactatactgtaa 923
||||||||||||||||||||||||||| || ||||||||| |||||| |||||| ||
Sbjct: 1032 aatcaccaataatgacaggaggagctaaggaggcttcagggaaagaaactaatactgaaa 1091
Query: 924 agacgggcaatgcac-agaaggagaaa 949
|||||| ||||||| |||||||||||
Sbjct: 1092 agacggcaaatgcacaagaaggagaaa 1118
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9757
Number of Sequences: 1807
Number of extensions: 9757
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)