BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD11RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1481 0.0
>3x_Contig1640
Length = 15521
Score = 1481 bits (747), Expect = 0.0
Identities = 863/892 (96%), Gaps = 8/892 (0%)
Strand = Plus / Plus
Query: 43 gcttcggcatacttatgacattattggaccgnagaccggacaacataatacccatacaat 102
|||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct: 13395 gcttcggcatacttatgacattatct-accagagaccggacaacataataggcatacaat 13453
Query: 103 ctgatgaccaaaaacgcttcctattggccagtaagctcattaaagcgtctgtctctattc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13454 ctgatgaccaaaaacgcttcctattggccagtaagctcattaaagcgtctgtctctattc 13513
Query: 163 ttatctggcgtctaattgatgtagtggtttccccttgtctctgattcgtgactctttata 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 13514 ttatctggcgtctaattgatgtagtggtttccccttgtctctgattcgtgactcaagata 13573
Query: 223 gggcagacagccacatagaagcaatcaataaccgaccgatgcttcgctgtcctagtatta 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13574 gggcagacagccacatagaagcaatcaataaccgaccgatgcttcgctgtcctagtatta 13633
Query: 283 ttcaatagggattggcgtagaaaatcgcacggaagcagcagcgaaaaaaagcctttcatt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13634 ttcaatagggattggcgtagaaaatcgcacggaagcagcagcgaaaaaaagcctttcatt 13693
Query: 343 ttacgtagtttttctggcgtttttttgttgtgaatttgacctttttatttacttgtcttg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13694 ttacgtagtttttctggcgtttttttgttgtgaatttgacctttttatttacttgtcttg 13753
Query: 403 tgtttttttctcaacgttcctctgccacagagaagcaggttggaatttcaacctttcaaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13754 tgtttttttctcaacgttcctctgccacagagaagcaggttggaatttcaacctttcaaa 13813
Query: 463 tatttagaccagtttgaaacattcttccggggtttctctatggcttctatttcattcatt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13814 tatttagaccagtttgaaacattcttccggggtttctctatggcttctatttcattcatt 13873
Query: 523 tatctgttatcctcaagtatatataaatatgggatgtacatgccatgggcaatttaagac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13874 tatctgttatcctcaagtatatataaatatgggatgtacatgccatgggcaatttaagac 13933
Query: 583 gaaatcatctaaccggtaaacgactggtgtttttttttttggttgatggtttccttaaa- 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13934 gaaatcatctaaccggtaaacgactggtgtttttttttttggttgatggtttccttaaat 13993
Query: 642 tatacaaatccagagataatcatatctaattaaccgctgtctgctctgctttcactgctt 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13994 tatacaaatccagagataatcatatctaattaaccgctgtctgctctgctttcactgctt 14053
Query: 702 tcgcatcaccgttttcttctttttacctttttt-agaaatanagatcttactggtactgc 760
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 14054 tcgcatcaccgttttcttctttttaccttttttaagaaataaagatcttactggtactgc 14113
Query: 761 tacgctaggtcatccacttgtgatttaat-acattgacatttagaaacttc-ttattttc 818
||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct: 14114 tacgctaggtcatccacttgtgatttaataacattgacattagaaaacttctttattttc 14173
Query: 819 tatta-ttact-gcacatattaccgctattattattatttgagag-aaagttactttntt 875
|| || ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 14174 taatatttactggcacatattaccgctattattattatttgagagaaaagttactttttt 14233
Query: 876 ttttttaaccggcacttttaaaatctcacaaaattgaaactgtcactttttt 927
| ||| |||||| |||||||||||||||| |||||| ||||||||||||||
Sbjct: 14234 tctttaaaccggaccttttaaaatctcacagaattgatactgtcactttttt 14285
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,252
Number of Sequences: 1807
Number of extensions: 13252
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)