BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD12FM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1152 0.0
>3x_Contig1770
Length = 29267
Score = 1152 bits (581), Expect = 0.0
Identities = 728/773 (94%), Gaps = 3/773 (0%)
Strand = Plus / Plus
Query: 92 ttagccataccaaatttatataacgcaacaggttgctgttcactgtattccatcaggaac 151
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8043 ttagccataccaaatttagataacgcaacaggttgctgttcactgtattccatcaggaac 8102
Query: 152 acttgagcactgtcaccaacagtcaattccgcagaatgttggaaaatttcgtgcacatcc 211
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8103 acttgagcactgtcaccaacagtcaagtccgcagaatgttggaaaatttcgtgcacatcc 8162
Query: 212 ttacctttatccttttttctcttacgggtctttattttactgaacactatgttggtacca 271
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8163 ttacctttatccttctttctcttacgggtctttatcttactgaacactatgttggtacca 8222
Query: 272 tgacgaatccgtttcccgaaatgatttctatgaaagtgtctcaactgatcttttggtaac 331
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8223 ggacgaatccgtttcccgaaatgatttctatgaaagtgtctcaactgatcttttggtaac 8282
Query: 332 acaactttgtagaatggagattgtaagcgcgtcgtcggttgagaatgttctatattcaaa 391
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 8283 acaactttgtagaatggagattgtaggcgcgtcgccggttgagaatgttctatattcaaa 8342
Query: 392 ttcgaaattgtttatctgatctttttttgatagttctatttcaaaatcttgtaagtgtca 451
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8343 ttcgaaattgtagatctgatctttttttgatagttctttttcaaaatcttgtaagtgtca 8402
Query: 452 tcgttagagatgttgaactttgctagtagagattgctcattatatggtattagaggttta 511
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 8403 tcgttagagatgttgaactttgctagtagagatttctcattatatggtattagaggttta 8462
Query: 512 acgaccttttgtgccgattcgattttattctcattacgcaaaataagtaatcgctcatca 571
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 8463 acgaccttttgtgccgattcgattttattctcattaggcaaaataagtaatcgctcatca 8522
Query: 572 ttcatatcaattggcggttctttatcactcaccttaccatttatgatatcatcttccctc 631
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 8523 ttcatatcaattggcggttctttagcactcaccttaccatttatgatatcatcttcgttc 8582
Query: 632 catttccagtctttcccatctttcttctaaa-tgttctcaactgctggcggattcctctt 690
|||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 8583 cattcccagtctttcccatc-ttcttctaaagtgttctcaactgctggcggattcctctt 8641
Query: 691 gttactcgccattggctgcttattttctctatcgtcaacattttttttataaccccattc 750
|||||||| |||||||| || ||||||||||||||||||| |||| | |||| |||||||
Sbjct: 8642 gttactcgtcattggctcctcattttctctatcgtcaacaattttctcataatcccattc 8701
Query: 751 attatttacaaagataatattttccggtatcacttaatcgtgcacatcttttcttggcat 810
|| | ||||| || || || |||||||||||||| ||||||| |||| ||||||| |||
Sbjct: 8702 atcagctacaatgagaagatcttccggtatcacttcatcgtgctcatc-tttcttgtcat 8760
Query: 811 ctataagatattctttttatatctaattggatgctactttgataacatgtctt 863
||| | || |||||| ||||||| || | |||||||||||||||||| ||||
Sbjct: 8761 ctacagtatcttctttatatatctcatcgtatgctactttgataacatttctt 8813
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8171
Number of Sequences: 1807
Number of extensions: 8171
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)