BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZD12RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1020 438 e-123
>3x_Contig1020
Length = 4879
Score = 438 bits (221), Expect = e-123
Identities = 297/317 (93%), Gaps = 4/317 (1%)
Strand = Plus / Plus
Query: 529 tcgtggaatggatgatcccagggttgttgaaggagccaaatgggtcggaccctttgaata 588
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgtggaatggatgatcccagg-ttgttgaaggagccaaatgggtcggaccctttgaata 59
Query: 589 acgaatcagcaactgtgcaactgaaggataaagatatgtttgaacaaaagatacatgaat 648
||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 60 acgaagcagcaacgttgcaactgaaggataaagatatgtatgaacaaaagatacatgaat 119
Query: 649 acatcaacaaatacgctaccaaggaaaaatacatacagcatttttgggaaatggaacagt 708
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 120 acatcaacaaatacgctaccaaggaaaaatacatacagca-gtttgggaaatggaacag- 177
Query: 709 ttccgatgatacagatgattgaggatgaggatgcggatatggacgaatcagacgacgagc 768
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ttccgatgatacagatga-tgaggatgaggatgcggatatggacgaatcagacgacgagc 236
Query: 769 aagcacatgacgataacgattttatgtaacttatttatatataagtcattgactactacg 828
|||||||||||||||||||| |||| |||| | | ||||| |||||| |||| || |||
Sbjct: 237 aagcacatgacgataacgatagtatggaactaagtgatatagaagtcagtgacgacgacg 296
Query: 829 attgatatttgaaagtt 845
||||| |||||||||||
Sbjct: 297 attgaaatttgaaagtt 313
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8230
Number of Sequences: 1807
Number of extensions: 8230
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)