BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZE02RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1600 0.0
>3x_Contig1771
Length = 25932
Score = 1600 bits (807), Expect = 0.0
Identities = 882/899 (98%), Gaps = 6/899 (0%)
Strand = Plus / Plus
Query: 41 gcttcctt-aacgtatttgaatgctagagttatcagagacaatttcaagacacagcaagt 99
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 18431 gcttccttcaacgtatttgaatgctagagttatcagagacaatttcaagagacagcaagt 18490
Query: 100 tgcagacaatgaagtcactgtaaaggcattgaaattcattgctagaaatactactctacc 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18491 tgcagacaatgaagtcactgtaaaggcattgaaattcattgctagaaatactactctacc 18550
Query: 160 tccaaggtcgagaatggaagctcagttacaactttctgtgatgcctaactatactttttt 219
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 18551 tccaaggtcgagaatggaagctcagttacaactttctgtgatgcctaactatacaagaat 18610
Query: 220 gacacaaatcaagaacagatgtattgaaacgggacactccagatctgttctgagtgattt 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18611 gacacaaatcaagaacagatgtattgaaacgggacactccagatctgttctgagtgattt 18670
Query: 280 cagattgtgtagatcgcaattcagagaacttgccaggaaaggtgatctacctggtgtgaa 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18671 cagattgtgtagatcgcaattcagagaacttgccaggaaaggtgatctacctggtgtgaa 18730
Query: 340 gaagggtgtatggtagatgcagtttagcatcttttgttccctgatactgaggttagtaaa 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18731 gaagggtgtatggtagatgcagtttagcatcttttgttccctgatactgaggttagtaaa 18790
Query: 400 agttggaatctttctctcccgcatgcatgtaaatatttttaattaactcaacatatataa 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18791 agttggaatctttctctcccgcatgcatgtaaatatttttaattaactcaacatatataa 18850
Query: 460 agcttgtgtatagacattaaaaaatacaaggtttaatcaatgtaaaagaagcgcttgggt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18851 agcttgtgtatagacattaaaaaatacaaggtttaatcaatgtaaaagaagcgcttgggt 18910
Query: 520 tgtggcaaagcaagtgacatttataagatgagaaagtgcagtatagtggtgataatattt 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18911 tgtggcaaagcaagtgacatttataagatgagaaagtgcagtatagtggtgataatattt 18970
Query: 580 aagtttcttacaaaataaaagagtgtaggtatataaaaataatttataggtagaaacaca 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18971 aagtttcttacaaaataaaagagtgtaggtatataaaaataatttataggtagaaacaca 19030
Query: 640 caaaacagaagagaggtagaagagaaaatgtcagggagggatggtcacttgaaaccagat 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19031 caaaacagaagagaggtagaagagaaaatgtcagggagggatggtcacttgaaaccagat 19090
Query: 700 ggaaacaaagaaaagaacgaggagaaaaaattaggaaattcaacggaaattaattgctga 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19091 ggaaacaaagaaaagaacgaggagaaaaaattaggaaattcaacggaaattaattgctga 19150
Query: 760 catttgtatattaaaaattgatcaattagaaaacaaatgaatatggtttggttcgtcttc 819
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 19151 catttgtatattaaaaattgatcaattag-aaacaaatgaatatggttt-gttcgtcttc 19208
Query: 820 cctcttnctttttttttggatctttactttttgcaattaacggttgttaaacaattccca 879
|||||| |||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct: 19209 cctctt-ctttttttttggatctttacttctgccaattaacggttg-taaacaattccca 19266
Query: 880 tcgccttataataatatcctcaaaactcagtcctctgtttcaaggt-aattcaaatgaa 937
|||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 19267 tcgcctaataataatatcctcaaagctcagtcctctgtttcaaggtaaattcaaatgaa 19325
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8846
Number of Sequences: 1807
Number of extensions: 8846
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)