BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZE03FM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1467 0.0
>3x_Contig1770
Length = 29267
Score = 1467 bits (740), Expect = 0.0
Identities = 870/899 (96%), Gaps = 12/899 (1%)
Strand = Plus / Plus
Query: 90 ggctctgaattcgtatcaatgccatcaatgtactggaagaacagcttcaaagtggtttct 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14277 ggctctgaattcgtatcaatgccatcaatgtactggaagaacagcttcaaagtggtttct 14336
Query: 150 ttttcacagaaaagaacgatactgacttacttcgttgtatcgttagtttcacattgtagt 209
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 14337 ttttcacagaaaagaacgatactgacatacttcgttgtatcgttagtttcacattgtagt 14396
Query: 210 ctgagatcgttta-atactcctctaactttgtagccatattcttataaatgttggttggt 268
||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 14397 ctgagatcgtttataaacgcctctaactttgtagccatattcttataaatgttggttggt 14456
Query: 269 tttccaacgccgtgttttagatgttcagataggtgttaataaaccgttgatcgaggctct 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14457 tttccaacgccgtgttttagatgttcagataggtgttaataaaccgttgatcgaggctct 14516
Query: 329 acggcgattcacgttcctgttttcattcttaaactttatgtttcaaacttagttacttgt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14517 acggcgattcacgttcctgttttcattcttaaactttatgtttcaaacttagttacttgt 14576
Query: 389 tttcctgatgtttacaaattcttgagcttaaacagtatctatttaataacccatcacagt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14577 tttcctgatgtttacaaattcttgagcttaaacagtatctatttaataacccatcacagt 14636
Query: 449 aaaagacagttaataaaggtgaattggactcacagccagttgccatagcagcattctgaa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14637 aaaagacagttaataaaggtgaattggactcacagccagttgccatagcagcattctgaa 14696
Query: 509 agctttaagatacctaattgaatcagtgttgttttaagatgattatctatccaaacaagt 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14697 agctttaagatacctaattgaatcagtgttgttttaagatgattatctatccaaacaagt 14756
Query: 569 atttagcgtcgagataaaatgtacatgcgtagtctaatttaattgatgaaatattggata 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14757 atttagcgtcgagataaaatgtacatgcgtagtctaatttaattgatgaaatattggata 14816
Query: 629 ctgaagaaatcaatagtcaccgctgttatatataccgatatcggattctgccttggcact 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14817 ctgaagaaatcaatagtcaccgctgttatatataccgatatcggattctgccttggcact 14876
Query: 689 ggccttgaggacgttcattgcacgagccttttccaattctaaaaggtaaccatcttcgac 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14877 ggccttgaggacgttcattgcacgagccttttccaattctaaaaggtaaccatcttcgac 14936
Query: 749 accagtgacatactgacctgtaaacacaccgacttcgaatttttgaatttgcggagtctt 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14937 accagtgacatactgacctgtaaacacaccgacttcgaatttttgaatttgcggagtctt 14996
Query: 809 gc-acagtc-atcaaatcgtcc-aagattggt-aatgacctcatcac-acctaacttatt 863
|| |||||| |||||||||||| ||||||||| |||||||||||||| |||||||| ||
Sbjct: 14997 gcaacagtcaatcaaatcgtccaaagattggtaaatgacctcatcacaacctaactcatg 15056
Query: 864 ttggattt-cttttcagccttatggtaagc-accaactgtttagtgtcagtcaaattcta 921
|||||||| || ||||| ||||| |||||| ||||||||||||||||||| |||| || |
Sbjct: 15057 ttggatttcctcttcagtcttatcgtaagcaaccaactgtttagtgtcagccaaa-tcga 15115
Query: 922 ta-cgttaatattgtttgaaaacggatggcagggacagcacatgccaaatataccttaa 979
|| ||| ||||| ||| |||||||||||||| ||||| |||| |||||||||||||
Sbjct: 15116 taccgtaaatatggtt--gaaacggatggcaggagcagcagatgcgaaatataccttaa 15172
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7001
Number of Sequences: 1807
Number of extensions: 7001
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)