BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZE03RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1159 1481 0.0
>3x_Contig1159
Length = 4873
Score = 1481 bits (747), Expect = 0.0
Identities = 811/826 (98%), Gaps = 5/826 (0%)
Strand = Plus / Minus
Query: 43 cttgtatctttgatgaactctact-cacctcgtgtgaaatgtcaagctactttggccttg 101
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1474 cttgtatctttgatgaactctacttcacctcgtgtgaaatgtcaagctactttggccttg 1415
Query: 102 agaaacttagcttcagataccaactaccaattggagattgttagagctggtggattacca 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1414 agaaacttagcttcagataccaactaccaattggagattgttagagctggtggattacca 1355
Query: 162 gacttggttcaattgattcagtcggattctttaccattagtcttggccagcgtcttttgt 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1354 gacttggttcaattgattcagtcggattctttaccattagtcttggccagcgtcgcatgt 1295
Query: 222 atcagaaatatttccatccatccattaaacgaaggtctaattgtagatgccggatttcta 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 atcagaaatatttccatccatccattaaacgaaggtctaattgtagatgccggatttcta 1235
Query: 282 ccacctttagtaaaattgcttgattaccaagaatcagaagaaattcaatgtcatgctgtt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 ccacctttagtaaaattgcttgattaccaagaatcagaagaaattcaatgtcatgctgtt 1175
Query: 342 tcaactttaagaaacttggctgcttcatctgaaaaaaatagagcagagttcttccaatct 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 tcaactttaagaaacttggctgcttcatctgaaaaaaatagagcagagttcttccaatct 1115
Query: 402 ggtgtaattgaaaaattcaagcaacttgccttgacatgtcccatcagcgttcaaagtgaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 ggtgtaattgaaaaattcaagcaacttgccttgacatgtcccatcagcgttcaaagtgaa 1055
Query: 462 attagtgcttgctttgctatcttggcactttcagataatactaaatatgatcttttgcaa 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 attagtgcttgctttgctatcttggcactttcagataatactaaatatgatcttttgcaa 995
Query: 522 caagacgtactaaaagttttgatcccaatgacaatgtcccaggaccaagagatctctggt 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 caagacgtactaaaagttttgatcccaatgacaatgtcccaggaccaagagatctctggt 935
Query: 582 aactctgctgctgctgtagcaaacttgatctctagggtcagcaatttagagaaaatattg 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 aactctgctgctgctgtagcaaacttgatctctagggtcagcaatttagagaaaatattg 875
Query: 642 gagtactggggtcaaccaaacgatggtatcaagggtttcttgatcagattcttgtctagt 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 gagtactggggtcaaccaaacgatggtatcaagggtttcttgatcagattcttgtctagt 815
Query: 702 gacttccctacctatgaacatattgctctatggnaccattttac-actattttgatgtca 760
||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 814 gacttccctacctatgaacatattgctctatgg-accattttacaactatttgaatgtca 756
Query: 761 caacgaaaccatttacaagttaattaaagaagatcaanaactcgtcaacgggggtcaaga 820
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 755 caacgaaaccatttacaagttaattaaagaagatcaaaaactcgtcaac-ggggtcaaga 697
Query: 821 aaattgcttatgaaaactacgcttttggctaggggatacatgcaag 866
|||| ||| ||||||||||||| | ||||||||| |||||||||||
Sbjct: 696 aaatcgctgatgaaaactacgc-tgtggctagggaatacatgcaag 652
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8039
Number of Sequences: 1807
Number of extensions: 8039
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)