BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC16ZE04FM1.SCF screened BAC_end
         (947 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1553                                                        1592   0.0  

>3x_Contig1553 
          Length = 8593

 Score = 1592 bits (803), Expect = 0.0
 Identities = 841/852 (98%), Gaps = 2/852 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   cacgtaaatctaggatggaccacttccttatatacgttcagtgataccaacgagaaattg 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5459 cacgtaaatctaggatggaccacttccttatatacgttcagtgataccaacgagaaattg 5518

                                                                        
Query: 146  ttctagcatatattctgcacttatataggagaaagagctttaataatatttttatatgca 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5519 ttctagcatatattctgcacttatataggagaaagagctttaataatatttttatatgca 5578

                                                                        
Query: 206  tcttcatatcgatactgttttgaaaaccccatagaatgcggcttattagagataaagtat 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579 tcttcatatcgatactgttttgaaaaccccatagaatgcggcttattagagataaagtat 5638

                                                                        
Query: 266  cgttgttttccactatagggaaaaaaagaacaaagaattttggattgaccaggtgactta 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5639 cgttgttttccactatagggaaaaaaagaacaaagaattttggattgaccaggtgactta 5698

                                                                        
Query: 326  aacgcttgaacgagggacattcaaggggaagagcaccgttgttcaaattaatcactcaaa 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5699 aacgcttgaacgagggacattcaaggggaagagcaccgttgttcaaattaatcactcaaa 5758

                                                                        
Query: 386  atggtccgatcatggatttgaagagctcgttcaatattttttatggcggggttaatttct 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5759 atggtccgatcatggatttgaagagctcgttcaatattttttatggcggggttaatttct 5818

                                                                        
Query: 446  ctataagcggtggtagaaagacggggaaggtgaaacgagaaagtgagaatgctaagaagt 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5819 ctataagcggtggtagaaagacggggaaggtgaaacgagaaagtgagaatgctaagaagt 5878

                                                                        
Query: 506  gaattttgtctattctataattgatacaacttttacttacaactgctgcaacaaagcaaa 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5879 gaattttgtctattctataattgatacaacttttacttacaactgctgcaacaaagcaaa 5938

                                                                        
Query: 566  ttcaaagggcataatagatgtaggtagtttgcgtatatattgttttgttctttttgggag 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5939 ttcaaagggcataatagatgtaggtagtttgcgtatatattgttttgttctttttgggag 5998

                                                                        
Query: 626  atcataagacacagtaggcaccatccactagtagatcggaaccggtagtgtatgtggatg 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5999 atcataagacacagtaggcaccatccactagtagatcggaaccggtagtgtatgtggatg 6058

                                                                        
Query: 686  catccgaagcgaagtacaagtatgcaccgacaagttctttgggcaaaccttcacggccca 745
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6059 catccgaagcgaagtacaagtatgcaccgacaagttcttggggcaaaccttcacggccca 6118

                                                                        
Query: 746  tagggatcaacgaatgccatttgttcttcanatcttcgtcaacgaagttcgaaattgggg 805
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6119 tagggatcaacgaatgccatttgttcttcaaatcttcgtcaacgaagttcgaaattgggg 6178

                                                                        
Query: 806  tagcgatgtaacctgnggacacggtattgacacgagcgaagccagcccattcgacgggcc 865
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 6179 tagcgatgtaacctggggacacggtattgacacgagcgaagccagcccattcgacggcca 6238

                                                                        
Query: 866  aagatttagcgaaatggatgacacc-gncttggcagcatt-ttacaggcttgcatttgag 923
            ||||||||||||||||||||||||| | |||||||||||| | ||||||||||| |||||
Sbjct: 6239 aagatttagcgaaatggatgacaccggccttggcagcattgtaacaggcttgcaattgag 6298

                        
Query: 924  ggatatttacga 935
            ||||||| ||||
Sbjct: 6299 ggatattcacga 6310


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6231
Number of Sequences: 1807
Number of extensions: 6231
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)