BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC16ZE04FM1.SCF screened BAC_end (947 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1553 1592 0.0 >3x_Contig1553 Length = 8593 Score = 1592 bits (803), Expect = 0.0 Identities = 841/852 (98%), Gaps = 2/852 (0%) Strand = Plus / Plus Query: 86 cacgtaaatctaggatggaccacttccttatatacgttcagtgataccaacgagaaattg 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5459 cacgtaaatctaggatggaccacttccttatatacgttcagtgataccaacgagaaattg 5518 Query: 146 ttctagcatatattctgcacttatataggagaaagagctttaataatatttttatatgca 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5519 ttctagcatatattctgcacttatataggagaaagagctttaataatatttttatatgca 5578 Query: 206 tcttcatatcgatactgttttgaaaaccccatagaatgcggcttattagagataaagtat 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5579 tcttcatatcgatactgttttgaaaaccccatagaatgcggcttattagagataaagtat 5638 Query: 266 cgttgttttccactatagggaaaaaaagaacaaagaattttggattgaccaggtgactta 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5639 cgttgttttccactatagggaaaaaaagaacaaagaattttggattgaccaggtgactta 5698 Query: 326 aacgcttgaacgagggacattcaaggggaagagcaccgttgttcaaattaatcactcaaa 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5699 aacgcttgaacgagggacattcaaggggaagagcaccgttgttcaaattaatcactcaaa 5758 Query: 386 atggtccgatcatggatttgaagagctcgttcaatattttttatggcggggttaatttct 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5759 atggtccgatcatggatttgaagagctcgttcaatattttttatggcggggttaatttct 5818 Query: 446 ctataagcggtggtagaaagacggggaaggtgaaacgagaaagtgagaatgctaagaagt 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5819 ctataagcggtggtagaaagacggggaaggtgaaacgagaaagtgagaatgctaagaagt 5878 Query: 506 gaattttgtctattctataattgatacaacttttacttacaactgctgcaacaaagcaaa 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5879 gaattttgtctattctataattgatacaacttttacttacaactgctgcaacaaagcaaa 5938 Query: 566 ttcaaagggcataatagatgtaggtagtttgcgtatatattgttttgttctttttgggag 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5939 ttcaaagggcataatagatgtaggtagtttgcgtatatattgttttgttctttttgggag 5998 Query: 626 atcataagacacagtaggcaccatccactagtagatcggaaccggtagtgtatgtggatg 685 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5999 atcataagacacagtaggcaccatccactagtagatcggaaccggtagtgtatgtggatg 6058 Query: 686 catccgaagcgaagtacaagtatgcaccgacaagttctttgggcaaaccttcacggccca 745 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 6059 catccgaagcgaagtacaagtatgcaccgacaagttcttggggcaaaccttcacggccca 6118 Query: 746 tagggatcaacgaatgccatttgttcttcanatcttcgtcaacgaagttcgaaattgggg 805 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 6119 tagggatcaacgaatgccatttgttcttcaaatcttcgtcaacgaagttcgaaattgggg 6178 Query: 806 tagcgatgtaacctgnggacacggtattgacacgagcgaagccagcccattcgacgggcc 865 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 6179 tagcgatgtaacctggggacacggtattgacacgagcgaagccagcccattcgacggcca 6238 Query: 866 aagatttagcgaaatggatgacacc-gncttggcagcatt-ttacaggcttgcatttgag 923 ||||||||||||||||||||||||| | |||||||||||| | ||||||||||| ||||| Sbjct: 6239 aagatttagcgaaatggatgacaccggccttggcagcattgtaacaggcttgcaattgag 6298 Query: 924 ggatatttacga 935 ||||||| |||| Sbjct: 6299 ggatattcacga 6310 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6231 Number of Sequences: 1807 Number of extensions: 6231 Number of successful extensions: 54 Number of sequences better than 1.0e-20: 1 length of query: 947 length of database: 10,358,551 effective HSP length: 16 effective length of query: 931 effective length of database: 10,329,639 effective search space: 9616893909 effective search space used: 9616893909 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)