BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZE04RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 1614 0.0
>3x_Contig1806
Length = 53694
Score = 1614 bits (814), Expect = 0.0
Identities = 862/873 (98%), Gaps = 4/873 (0%)
Strand = Plus / Minus
Query: 43 gcttcggtaaatcca-ttggtgttttggtattcacagaattgtgttactcaaaaaatcgc 101
||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 36274 gcttcggtaaatccaattggtgatagggtattcacagaattgtgttactcaaaaaatcgc 36215
Query: 102 tgtgagcaataaagtatgtgtttggtattttcaattatgcccaatcgaccacctataaga 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36214 tgtgagcaataaagtatgtgtttggtattttcaattatgcccaatcgaccacctataaga 36155
Query: 162 gtaatattacccatcactaattactacagcggcttcccggtattattattaggtactgat 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36154 gtaatattacccatcactaattactacagcggcttcccggtattattattaggtactgat 36095
Query: 222 ttacttctcaaaatatgggaagtgaaattctatcactgggtttaatcgtatttgaaaaat 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36094 ttacttctcaaaatatgggaagtgaaattctatcactgggtttaatcgtatttgaaaaat 36035
Query: 282 atcatccgctccagtagaaccctttgccaatgtttattgtactattggtgatatataaac 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36034 atcatccgctccagtagaaccctttgccaatgtttattgtactattggtgatatataaac 35975
Query: 342 gttaattgaattgaagatcttatatgcattcattaaaagagacaccatttacttcctgtt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35974 gttaattgaattgaagatcttatatgcattcattaaaagagacaccatttacttcctgtt 35915
Query: 402 aattttgagtagtaaatttttgttttcgttcattcattcacttttctgtgcaattcatcc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35914 aattttgagtagtaaatttttgttttcgttcattcattcacttttctgtgcaattcatcc 35855
Query: 462 cttcatcgcccaactcctgtcctgcaactctgtcggtacggaatatccccatacattaat 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35854 cttcatcgcccaactcctgtcctgcaactctgtcggtacggaatatccccatacattaat 35795
Query: 522 taaatgagattagaatactattttgcgttggtcgcaactctatggctaactactgtctat 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35794 taaatgagattagaatactattttgcgttggtcgcaactctatggctaactactgtctat 35735
Query: 582 gcagcttctgaaaaattcggtcttaagcttactggaccaaacgaattaaaaggaatgatg 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35734 gcagcttctgaaaaattcggtcttaagcttactggaccaaacgaattaaaaggaatgatg 35675
Query: 642 atttatgaagacggaagctcgctttttattggtaaacattccggtgatatcatagaaggt 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35674 atttatgaagacggaagctcgctttttattggtaaacattccggtgatatcatagaaggt 35615
Query: 702 acaattcaagaggatgggtccttgaaattgggcactggagagttcattgggataaacaag 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35614 acaattcaagaggatgggtccttgaaattgggcactggagagttcattgggataaacaag 35555
Query: 762 aactatctaactttaaccactaactatacccaatacgctacgccatttgctatcaatggg 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35554 aactatctaactttaaccactaactatacccaatacgctacgccatttgctatcaatggg 35495
Query: 822 gatggatatttgacgctgtatggagaaaaag-attttaggccattnccagcggtcagaca 880
||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||||||
Sbjct: 35494 gatggatatttgacgctgtatggagaaaaagaattcaaggccattccaagcggtcagaca 35435
Query: 881 gacatatgggattttggctttctaataatgctg 913
||||||| |||||||||| ||||||||||||||
Sbjct: 35434 gacatat-ggattttggc-ttctaataatgctg 35404
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7080
Number of Sequences: 1807
Number of extensions: 7080
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)