BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZE06FM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1627 361 2e-99
3x_Contig757 353 4e-97
>3x_Contig1627
Length = 15708
Score = 361 bits (182), Expect = 2e-99
Identities = 211/218 (96%), Gaps = 2/218 (0%)
Strand = Plus / Minus
Query: 92 agattgaatcaccacatcacagtagaaaaacacgcttcatcagctgcaatcattgggata 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 agattgaatcaccacatcacagtagaaaaacacgcttcatcagctgcaatcattgggata 157
Query: 152 actcatcggttattggcagaggtaacacaattaatactctgatttggttgaaaaagccag 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 actcatcggttattggcagaggtaacacaattaatactctgatttggttgaaaaagccag 97
Query: 212 cggtaggaacatttttttgattttaatcctcatataacagtcaaagcagcgaatgttctc 271
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 cggtaggaacaaaggtctgattttaatcctcatataacagtcaaagcagcgaatgttctc 37
Query: 272 tcggtttttcacaagatcggtttcaactggtgtagagt 309
|||| ||||||||||||||| |||||||||||||||||
Sbjct: 36 tcgg-ttttcacaagatcgg-ttcaactggtgtagagt 1
>3x_Contig757
Length = 2436
Score = 353 bits (178), Expect = 4e-97
Identities = 253/272 (93%), Gaps = 5/272 (1%)
Strand = Plus / Plus
Query: 715 acgtagatgtatggtataatactgtattgatgtgtcaattgcatagaaatgcgttccaaa 774
|||| ||| |||||| ||||||| |||||||||||||||| | |||||||||||||||||
Sbjct: 89 acgttgatttatggtttaatactttattgatgtgtcaatttcttagaaatgcgttccaaa 148
Query: 775 acgttcaagattccngcatggtagagagaggcctaaggaagttatcatcgactgttacca 834
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 acgttcaagattccggcatggtagagagaggcctaaggaagttatcatcgactgttacca 208
Query: 835 aaaga-aagatacaactggnttaacaaaggaaattgttc-agcttttggtagaccacata 892
||||| ||||||||||||| ||||||||||||||||||| |||||| ||||||| ||| |
Sbjct: 209 aaagagaagatacaactggtttaacaaaggaaattgttcaagctttgggtagacaacaga 268
Query: 893 acgttgaagtgaaattacctaatttcgctaggaatatttgaaattaac-tgccatcgatc 951
||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||
Sbjct: 269 acgttgaggtgaaattacctaatttcgctagaaata-ttgaaattaacttgccatcgatc 327
Query: 952 gatgttagcattgcaagcc-aaatcaattaag 982
|||||||||| |||||||| ||||||||||||
Sbjct: 328 gatgttagcactgcaagccaaaatcaattaag 359
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7092
Number of Sequences: 1807
Number of extensions: 7092
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 2
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)