BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC16ZE06RM1.SCF screened BAC_end
         (948 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1640                                                        1518   0.0  

>3x_Contig1640 
          Length = 15521

 Score = 1518 bits (766), Expect = 0.0
 Identities = 852/875 (97%), Gaps = 5/875 (0%)
 Strand = Plus / Plus

                                                                         
Query: 43    cttttgtcaattcgacgttcta-gtactaggtccaacgtttcctatctacttgaaggtag 101
             |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||
Sbjct: 11342 cttttgtcaattcgacgttctatgaactaggtccaacgtttcctatctagttgaaggtag 11401

                                                                         
Query: 102   ccctacgtttgaagtcgttattgttttcttgctaaatactatgatcctccctattattgt 161
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11402 ccctacgtttgaagtcgttattgttttcttgctaaatactatgatcctccctattattgt 11461

                                                                         
Query: 162   tatttttattgtaacaatcgcactttctttattttcaacactaattcaaggttaatatac 221
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 11462 tatttttattgtaacaatcgcactttctttattttcaacactaattcaaggttaaaagac 11521

                                                                         
Query: 222   aaacgttctagacgcatataactgcattcagttcaggcattgatctcgagcgttaacaaa 281
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11522 aaacgttctagacgcatataactgcattcagttcaggcattgatctcgagcgttaacaaa 11581

                                                                         
Query: 282   ctagttggacaatttcagatgctcataaattgctgaagatccaggaatgttcagcacctc 341
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11582 ctagttggacaatttcagatgctcataaattgctgaagatccaggaatgttcagcacctc 11641

                                                                         
Query: 342   gaaaggtagtatgtcagttcaaccaatatcgtaaaatagtgactgaagttttcttcacgt 401
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11642 gaaaggtagtatgtcagttcaaccaatatcgtaaaatagtgactgaagttttcttcacgt 11701

                                                                         
Query: 402   gacccagatctgtgaacggaggtttcaatattaattataacaaagacgatcctgggttgg 461
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11702 gacccagatctgtgaacggaggtttcaatattaattataacaaagacgatcctgggttgg 11761

                                                                         
Query: 462   cagagaaaaactcggatcccttcactgcaaagtttatacacaaaaccatattccctcatt 521
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11762 cagagaaaaactcggatcccttcactgcaaagtttatacacaaaaccatattccctcatt 11821

                                                                         
Query: 522   tgtcccaaacttcgtttcacgatggacaggccatggatactattcatagctgaacctgaa 581
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11822 tgtcccaaacttcgtttcacgatggacaggccatggatactattcatagctgaacctgaa 11881

                                                                         
Query: 582   tacagtttacaggaatataagcttttgcaaaaagagttcaacacggttaattacacactt 641
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11882 tacagtttacaggaatataagcttttgcaaaaagagttcaacacggttaattacacactt 11941

                                                                         
Query: 642   gaacgagatgttgatggcactggtaaggaagcatttctaactttcttggaccagcattcg 701
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11942 gaacgagatgttgatggcactggtaaggaagcatttctaactttcttggaccagcattcg 12001

                                                                         
Query: 702   aagcanaagggtccaattgttcgaatatttggagggtatccacaattcgctcccttaggt 761
             ||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 12002 aagcaaaagggtccaattgtcggaatatttggagggtatccacaattcgctcccttaggt 12061

                                                                         
Query: 762   ggtttgagtgcagaaatcttggatgatcatcgtttgccctgngtcgatcaagtgcatatg 821
             |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct: 12062 ggtttgagtgcagaaatcttggatgatcatcg-ttggcctgggtcgatcaagtgcatatg 12120

                                                                         
Query: 822   tctgtgtttctgtaagttacaatttgcctcgacctgaattccttacgggaaaaaggcatt 881
             |||||| ||||||| ||||||| ||| ||||||||||| ||  |||||||||| ||||||
Sbjct: 12121 tctgtg-ttctgtaggttacaa-ttggctcgacctgaagtcactacgggaaaagggcatt 12178

                                                
Query: 882   ctactgttccaattatgacgacatgatacangact 916
             | |||| | ||||||||||||||||||||| ||||
Sbjct: 12179 caactg-tacaattatgacgacatgatacaggact 12212


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6344
Number of Sequences: 1807
Number of extensions: 6344
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)