BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZE07RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig853 1239 0.0
>3x_Contig853
Length = 2329
Score = 1239 bits (625), Expect = 0.0
Identities = 740/771 (95%), Gaps = 6/771 (0%)
Strand = Plus / Minus
Query: 49 gcttggatcgnntctgatgttgatgaggtcggtacacagttggaaaaactggtagaaacc 108
|||||||||| |||||||||| || ||||||||||||||| | || |||||||||||
Sbjct: 1083 gcttggatcgtttctgatgttgtagaaatcggtacacagttggtagaattggtagaaacc 1024
Query: 109 ccagcagattcttgccaagaagaagatcaagatcaaaacgacattgttcaccaattggat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 ccagcagattcttgccaagaagaagatcaagatcaaaacgacattgttcaccaattggat 964
Query: 169 cacgttactcaccttggccatgacagtctgacagtctttggtcagttgtggtttttt-tt 227
|||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 963 cacgttacacaccttggccatgacagtctgacagtctttggtcagttgtggcaagtactt 904
Query: 228 gatcccgaaccatctgatattcaagaatggattggtttttttcgaacatcaggaaaatac 287
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 903 gatcccgaaccatctgatattcaagaatggattggatagct-cgaacatcaggaaaatac 845
Query: 288 ctgcgtagtagttgatgtaaggttttaaaccaatagcataaaccaccgtagagatcaaac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ctgcgtagtagttgatgtaaggttttaaaccaatagcataaaccaccgtagagatcaaac 785
Query: 348 cgtgcagcacgaatgggagggtagagtagaccaatgaaatgtagatatcccataggaagt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 cgtgcagcacgaatgggagggtagagtagaccaatgaaatgtagatatcccataggaagt 725
Query: 408 acccaattgcgaaaacgcataccttcacgttatatgggtccatgccaaagatacgatcgt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 acccaattgcgaaaacgcataccttcacgttatatgggtccatgccaaagatacgatcgt 665
Query: 468 gagagtttagatctggtttttcattgttatatgcaatggcctcgaaactgagataaagca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gagagtttagatctggtttttcattgttatatgcaatggcctcgaaactgagataaagca 605
Query: 528 cgatcagagattggatccaactcaccagacgaacggcactctggttgacaaggtctgcat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cgatcagagattggatccaactcaccagacgaacggcactctggttgacaaggtctgcat 545
Query: 588 gctgcttttccttagacttacgttggtctttcgtagtctccggatcccaggataacctat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gctgcttttccttagacttacgttggtctttcgtagtctccggatcccaggataacctat 485
Query: 648 aagaagctagaggtgggaataagacccgttgagataacaggaatagcgcatgatacccga 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aagaagctagaggtgggaataagacccgttgagataacaggaatagcgcatgatacccga 425
Query: 708 cggcaatgtacaacacagtgtgtaaattggatagaatcacattttaaagtaatccattca 767
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct: 424 cggcaatgtacaacacagtgtgtaaattggatagaatcaca-ttcgaagtaatccatcca 366
Query: 768 ttgggattcaagatatgggattcacttacttcgttcaaatgagggtgcgga 818
|| |||||| |||||||||| |||| ||| ||| |||||||||||||||||
Sbjct: 365 tt-ggattcgagatatggga-tcacgtac-tcggtcaaatgagggtgcgga 318
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6354
Number of Sequences: 1807
Number of extensions: 6354
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)