BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZE08FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1095 1588 0.0
>3x_Contig1095
Length = 5701
Score = 1588 bits (801), Expect = 0.0
Identities = 847/859 (98%), Gaps = 3/859 (0%)
Strand = Plus / Minus
Query: 86 caggagattgaccacacacagatgaaacagtcactgatcacattttcaaagttttagatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 caggagattgaccacacacagatgaaacagtcactgatcacattttcaaagttttagatc 950
Query: 146 atcctgaaacatactcactattataccgtactaaaaaatatcctttctaaattttccgtt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 atcctgaaacatactcactattataccgtactaaaaaatatcctttctaaattttccgtt 890
Query: 206 ctatcaagcacactttcaggatgcagaaggggagtagaatcgttcttacttcggtaaaag 265
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 ctatcaagcacacctacaggatgcagaaggggagtagaatcgttcttacttcggtaaaag 830
Query: 266 aacggtgagtaaatttaaatctatgtagtgtataagcggtaaaatagagagttctagcca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aacggtgagtaaatttaaatctatgtagtgtataagcggtaaaatagagagttctagcca 770
Query: 326 ccgaaggttatcaccatagtgggtaatatatataaggggagatgggagaaaaccgtgggg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ccgaaggttatcaccatagtgggtaatatatataaggggagatgggagaaaaccgtgggg 710
Query: 386 atccactatttaggaatagaattcaacttgaaattgggtaatgaaaaaaaaaaaagcaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 atccactatttaggaatagaattcaacttgaaattgggtaatgaaaaaaaaaaaagcaaa 650
Query: 446 ggctaaattacccatcttacctggacctctcatatgtgatccttacgaactagtagggga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ggctaaattacccatcttacctggacctctcatatgtgatccttacgaactagtagggga 590
Query: 506 aacgggagggtctgtaacctcacttaatagaattgaaaataataagtataattttgcttc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aacgggagggtctgtaacctcacttaatagaattgaaaataataagtataattttgcttc 530
Query: 566 atcttgcaacggtaactgaagttgtaggagagcctgctcttttcggtatcttgctaacag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 atcttgcaacggtaactgaagttgtaggagagcctgctcttttcggtatcttgctaacag 470
Query: 626 aagagggagacaacgacattgtatctgactcttccataggtctgccagatgatcgtctcc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aagagggagacaacgacattgtatctgactcttccataggtctgccagatgatcgtctcc 410
Query: 686 ttcttgaaccacacataatagaggatgctctgcgtggtaaagattcgatacctgtagata 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttcttgaaccacacataatagaggatgctctgcgtggtaaagattcgatacctgtagata 350
Query: 746 aattcggagttaacattgtgctgccagttctcaaagtgggggagtaaccttccatgaaat 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aattcggagttaacattgtgctgccagttctcaaagtgggggagtaaccttccatgaaat 290
Query: 806 caatttcgttttttgtaactgagttacgttnccgttgcaattctgggtgtta-gttatcc 864
|||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct: 289 caatttcgttttttgtaactgagttacgtttccgttgcaattctgg-tgttaagttatcc 231
Query: 865 agcagttgtgatgacgagaatggtcgtcttgaa-ttgccccactagaagtacttgttatg 923
||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||||||
Sbjct: 230 agcagttgtgatgacgaagatggtcgtcttgaatttgccgcactagaagtacctgttatg 171
Query: 924 ttacccatttcaacgncca 942
||||||||| ||||| |||
Sbjct: 170 ttacccattccaacgccca 152
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,300
Number of Sequences: 1807
Number of extensions: 12300
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)