BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZE08RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1618 0.0
>3x_Contig1780
Length = 27883
Score = 1618 bits (816), Expect = 0.0
Identities = 872/887 (98%), Gaps = 4/887 (0%)
Strand = Plus / Minus
Query: 44 cttatctacttagagactatttt--aactaaaaaaccgtactctttagattccctattag 101
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 5189 cttatctacttagagactatattccaactaaaaaaccgtactctttagattccctattag 5130
Query: 102 acgatttgttggattacgcaagtcaaagactccccattaatggtagattggctttctgga 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5129 acgatttgttggattacgcaagtcaaagactccccattaatggtagattggctttctgga 5070
Query: 162 tgcccactgccaatgacgagaatgttgcaactataattcctcttcattcgaatttttaac 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5069 tgcccactgccaatgacgagaatgttgcaactataattcctcttcattcgaatttggaac 5010
Query: 222 tgaagtataactgtgttcaagatttcaataaatggtctagaagattattggtgtatatca 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5009 tgaagtataactgtgttcaagatttcaataaatggtctagaagattattggtgtatatca 4950
Query: 282 atagaggacacgaatttaatggacccaacaattctggtttgagtagaactggtaatttca 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4949 atagaggacacgaatttaatggacccaacaattctggtttgagtagaactggtaatttca 4890
Query: 342 gagatagatacttcagcgggttcaattgatattattggacctgatataaggctaataata 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4889 gagatagatacttcagcgggttcaattgatattattggacctgatataaggctaataata 4830
Query: 402 gacatctgctcactctagcattacactataatatgtatcattagttaaaatacaaattaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4829 gacatctgctcactctagcattacactataatatgtatcattagttaaaatacaaattaa 4770
Query: 462 tatttataaaatcgatattattacatttattatacacaaagttacaatgactgacaatat 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4769 tatttataaaatcgatattattacatttattatacacaaagttacaatgactgacaatat 4710
Query: 522 tatacaatattatacatattccttgcatatcatcttccactgccaatacttggtatcatg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4709 tatacaatattatacatattccttgcatatcatcttccactgccaatacttggtatcatg 4650
Query: 582 acgctataacttgaaattcattactaagtgcagcaggaactcgtggagcctgggtttgaa 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4649 acgctataacttgaaattcattactaagtgcagcaggaactcgtggagcctgggtttgaa 4590
Query: 642 ccatcgtcgttttggttattcaatggtttattcaaatccacagttttggatttattcttc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4589 ccatcgtcgttttggttattcaatggtttattcaaatccacagttttggatttattcttc 4530
Query: 702 attaatctctgtcgcacgccacggggagtgcctggaatatcctccaaactactttcacta 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4529 attaatctctgtcgcacgccacggggagtgcctggaatatcctccaaactactttcacta 4470
Query: 762 tcttctgattggtctgatgaaattactctaagctctctgtcatcctcataacacccgctt 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4469 tcttctgattggtctgatgaaattactctaagctctctgtcatcctcataacacccgctt 4410
Query: 822 tctaccaaatcttttaatataatattgaatgtccctttctaccacattcttccattttac 881
|||||||||||||| | |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 4409 tctaccaaatctttaataataatattgaatgt-cctttctaccacattctcccatttaca 4351
Query: 882 actaacttcaaagttacctgata-ttttatattataaactttctcaa 927
||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 4350 actaacttcaaagttacctgatatttttatattataatctttctcaa 4304
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7844
Number of Sequences: 1807
Number of extensions: 7844
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)