BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZE09FM1.SCF screened BAC_end
(1001 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1646 862 0.0
3x_Contig1223 470 e-132
>3x_Contig1646
Length = 14145
Score = 862 bits (435), Expect = 0.0
Identities = 500/515 (97%), Gaps = 5/515 (0%)
Strand = Plus / Plus
Query: 332 gttggcataagaacgaacgcatccttaccctgtaaagtggcattaactgcttccaattga 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttggcataagaacgaacgcatccttaccctgtaaagtggcattaactgcttccaattga 60
Query: 392 tttggtctaaatgaatcaagtccaaag-acatgccgtaatttgtggtacatttctgatgt 450
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61 tttggtctaaatgaatcaagtccaaagcacatgccgtaatttgtggtacatttctgatgt 120
Query: 451 ccatgcatattgaggttgtactgaattctctctcgtacacttctcggtttcctccatata 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccatgcatattgaggttgtactgaattctctctcgtacacttctcggtttcctccatata 180
Query: 511 gggttccaggtctgccatggaaaagtcatcatcttcaataactttctggcactggcacca 570
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 181 gggttccaggtctgccatggaaaagtcatcatcttcaataactt-ctggcactggcacca 239
Query: 571 gttcagtttgtaattgcgtgtcaaggcttttcggttccttcttgatagcgaatgataagg 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gttcagtttgtaattgcgtgtcaaggcttttcggttccttcttgatagcgaatgataagg 299
Query: 631 gcacatcttcggcatctaatttcgcctttgaaatgattttcaagtcgtcatccagttcct 690
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 300 gcacatcttcggcatctaatttcgcctctgaaatgattttcaagtcgtcatccagttcct 359
Query: 691 ttatttcatcaaactgcgtttggtcttcttgttcagcatcaaact-ctccagatctgtat 749
| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 360 taatttcatcaaactgcgtttggtcttctcgttcagcatcaaactcctccagatctgtat 419
Query: 750 ctgacagtggttcaaacttcttggattgaactgcaacgggtatgatcctgcggcagagac 809
|||||||||||||||||| || ||| || |||||||| ||||||||||||||||||||||
Sbjct: 420 ctgacagtggttcaaactcctcggagtgcactgcaac-ggtatgatcctgcggcagagac 478
Query: 810 ttctgaaatggggtttttcaggaattttacatcat 844
||||||||||||| || |||||||| ||||||||
Sbjct: 479 -tctgaaatggggtcttccaggaattctacatcat 512
>3x_Contig1223
Length = 4555
Score = 470 bits (237), Expect = e-132
Identities = 246/249 (98%)
Strand = Plus / Plus
Query: 87 taatcatttctggagaaatataaaccaattctagtaatccattcatgaacaaattgaaag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4302 taatcatttctggagaaatataaaccaattctagtaatccattcatgaacaaattgaaag 4361
Query: 147 tcattcttctttgttcggctgttcctttagaactgaacatactagctttgatatcttttg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4362 tcattcttctttgttcggctgttcctttagaactgaacatactagctttgatatcttttg 4421
Query: 207 ccaaaagatgctcattttgatcctgcatcaaagaaatcaaaggagagacaacgatcgtgg 266
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4422 ccaaaagatgctcaacctgatcctgcatcaaagaaatcaaaggagagacaacgatcgtgg 4481
Query: 267 tcccagatgtccttcctgatttcacaatagccggaagttggtaacagagtgacttaccac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4482 tcccagatgtccttcctgatttcacaatagccggaagttggtaacagagtgacttaccac 4541
Query: 327 cacctgttg 335
|||||||||
Sbjct: 4542 cacctgttg 4550
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7788
Number of Sequences: 1807
Number of extensions: 7788
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 2
length of query: 1001
length of database: 10,358,551
effective HSP length: 16
effective length of query: 985
effective length of database: 10,329,639
effective search space: 10174694415
effective search space used: 10174694415
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)