BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZE09RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1410 1231 0.0
>3x_Contig1410
Length = 7640
Score = 1231 bits (621), Expect = 0.0
Identities = 729/757 (96%), Gaps = 6/757 (0%)
Strand = Plus / Plus
Query: 39 aaaaccttgagtttggacgttaagatcttg-agcgcgagagcaacgtaaagtactggtct 97
|||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||
Sbjct: 1295 aaaagcttgagtttggacgttaagatcttggagccagagagcaacgtagagtactggtct 1354
Query: 98 aagttgttcccattgaagaaagttccatgttacgttggttctgatgggtttaagttaacg 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355 aagttgttcccattgaagaaagttccatgttacgttggttctgatgggtttaagttaacg 1414
Query: 158 caacagcttgcaatcttagtttacttggtcaacttgagcgataacaatgctgagatccat 217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 caacagcttgcaatcttagtttacttggtcaacttgagcgataacaatgctgagatccag 1474
Query: 218 tttctactaggtaagggcaacaaggaaaaagctgaggtgtttttttggctatctcttgcc 277
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1475 cgtctactaggtaagggcaacaaggaaaaagctgaggtgttgcaatggctatctcttgcc 1534
Query: 278 aatacagacttgtgcctagcttttactcgcggtgcattcccgttgaacggcagaagccct 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1535 aatacagacttgtgcctagcttttactcgcggtgcattcccgttgaacggcagaagccct 1594
Query: 338 tacaataagaaacaagtggatgacgcatatgcagaattggacagacttgtccaaaggtac 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1595 tacaataagaaacaagtggatgacgcatatgcagaattggacagacttgtccaaaggtac 1654
Query: 398 gaacaacgtttgaacgaccacaagtacctcgttggtgaccgtgcgtcccttgcagattat 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1655 gaacaacgtttgaacgaccacaagtacctcgttggtgaccgtgcgtcccttgcagattat 1714
Query: 458 ttgagtgctattattttcactaggatcttcgagactttgtacggaaagaaatggcgtgaa 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1715 ttgagtgctattattttcactaggatcttcgagactttgtacggaaagaaatggcgtgaa 1774
Query: 518 gaacatgcaaagttgacgcaatggttcactaatatcactgaagatccattcgtgtctttc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1775 gaacatgcaaagttgacgcaatggttcactaatatcactgaagatccattcgtgtctttc 1834
Query: 578 ttatgggagggtattacactctgcgacgaaccattgccaaacccaccaaccaaatgatcg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835 ttatgggagggtattacactctgcgacgaaccattgccaaacccaccaaccaaatgatcg 1894
Query: 638 cattgacaaatttcaagtttatacatcctctttatatacattgtcttctctattagtaac 697
|||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||
Sbjct: 1895 cattgacaaatttcaagtttatacat-ctctttatataca-tgtcttctctatcagtaac 1952
Query: 698 acttttttctatgaaataagcttccaaagatcgtcaagcgaggaattatcctcgaacgaa 757
|| ||| ||||||| |||||||| |||||||||||||||||| | ||| |||||||||||
Sbjct: 1953 ac-tttgtctatgagataagctt-caaagatcgtcaagcgagaagtta-cctcgaacgaa 2009
Query: 758 ttatgttctttccggtctattcgggaaaagcattcct 794
||| || || ||||||||| ||||||||||| ||||
Sbjct: 2010 ttaggtactagccggtctatccgggaaaagcagtcct 2046
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8600
Number of Sequences: 1807
Number of extensions: 8600
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)