BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZE10FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig790 1507 0.0
>3x_Contig790
Length = 4570
Score = 1507 bits (760), Expect = 0.0
Identities = 800/812 (98%), Gaps = 1/812 (0%)
Strand = Plus / Minus
Query: 141 aattttgtattatagggctgatccgtaatgactatgactgaggcagaattgcaacaggtt 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4569 aattttgtattatagggctgatccgtaatgactatgactgaggcagaattgcaacaggtt 4510
Query: 201 gttgaatctaatggtattctaaatggatcggaggtagaagcggtgcagaaatctatcaaa 260
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4509 gttgaatctaatggtattccaaatggatcggaggtagaagcggtgcagaaatctatcaaa 4450
Query: 261 aacttgagtttggaaaatcttgacaacaccgaagcagagaagtcggaatcagaaccaata 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4449 aacttgagtttggaaaatcttgacaacaccgaagcagagaagtcggaatcagaaccaata 4390
Query: 321 ccagaatcgaactcacaagaagaatcccaagattcagaggcttcagaaaatggagaacaa 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4389 ccagaatcgaactcacaagaagaatcccaagattcagaggcttcagaaaatggagaacaa 4330
Query: 381 gacgaatctaatgttaaaacgaattccgggaaaaaagatcatcatcatcaatcgagggca 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4329 gacgaatctaatgttaaaacgaattccgggaaaaaagatcatcatcatcaatcgagggca 4270
Query: 441 gaaagattagagaaacaaattgaacttgactctcgctcgatctttgtcggtaatattacc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4269 gaaagattagagaaacaaattgaacttgactctcgctcgatctttgtcggtaatattacc 4210
Query: 501 accgaagccacagctgaaacacttgaagagcatttcaaagattgtggtgaggttgttagg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4209 accgaagccacagctgaaacacttgaagagcatttcaaagattgtggtgaggttgttagg 4150
Query: 561 gtcaccattctttacaataaactgactggtgctcctaaaggctacgcctatattgagttc 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4149 gtcaccattctttacaataaactgactggtgctcctaaaggctacgcctatattgagttc 4090
Query: 621 gaaagttcggattctattcctaaggctttggaattgaaggattctgaattgcatggagaa 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4089 gaaagttcggattctattcctaaggctttggaattgaaggattctgaattgcatggagaa 4030
Query: 681 accatcaatgtggctaaaaagagaaccaacgttcctggatataataacaacaaaaattac 740
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4029 accatcaatgtggctaaccagagaaccaacgttcctggatataataacaacaaaaattac 3970
Query: 741 tacccaagaaaagaatgggtttacccgggcttgcaaggaaacgttatgcgtcaatggtat 800
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3969 tacccaagaaaagaatgggtttacccgggctggcaaggaaacgttatgcgtcaatggtat 3910
Query: 801 tatccatacgccgcaccaggttatcaaaattacaaacccaaacgcatgcctatttcacct 860
|||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct: 3909 tatccatacgccgcaccaggttatcaaaattacaaaccaaacggcatgcctattccacct 3850
Query: 861 tctcctcaaaa-acattctatcctcaatacccatatgtgccacgtcctactcataattct 919
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3849 cctcctcaaaatacattctatcctcaatacccatatgtgccacgtcctactcataattct 3790
Query: 920 ggtcttaaaatggttggctatccaagaagcaa 951
||||||||||||| ||||||||||||| ||||
Sbjct: 3789 ggtcttaaaatgggtggctatccaagaggcaa 3758
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7420
Number of Sequences: 1807
Number of extensions: 7420
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)