BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZE10RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig853 1473 0.0
>3x_Contig853
Length = 2329
Score = 1473 bits (743), Expect = 0.0
Identities = 791/808 (97%)
Strand = Plus / Minus
Query: 50 gatcgtttctgatgttgnataaatcggtacacagttggtaaaattggtagaaaccccagc 109
||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct: 1078 gatcgtttctgatgttgtagaaatcggtacacagttggtagaattggtagaaaccccagc 1019
Query: 110 agattcttgccaagaagaagatcaagatcaaaacgacattgttcaccaattggatcacgt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 agattcttgccaagaagaagatcaagatcaaaacgacattgttcaccaattggatcacgt 959
Query: 170 tacacaccttggccatgacagtctgacagtctttggtcagttgtggcaagtacttgatcc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 tacacaccttggccatgacagtctgacagtctttggtcagttgtggcaagtacttgatcc 899
Query: 230 cgaaccatctgatattcaagaatggattggatatttcgaacatcaggaaaatacctgcgt 289
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 898 cgaaccatctgatattcaagaatggattggatagctcgaacatcaggaaaatacctgcgt 839
Query: 290 agtagttgatgtaaggttttaaaccaatagcataaaccaccgtagagatcaaaccgtgca 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 agtagttgatgtaaggttttaaaccaatagcataaaccaccgtagagatcaaaccgtgca 779
Query: 350 gcacgaatgggagggtagagtagaccaatgaaatgtagatatcccataggaagtacccaa 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gcacgaatgggagggtagagtagaccaatgaaatgtagatatcccataggaagtacccaa 719
Query: 410 ttgcgaaaacgcataccttcacgttatatgggtccatgccaaagatacgatcgtgagagt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttgcgaaaacgcataccttcacgttatatgggtccatgccaaagatacgatcgtgagagt 659
Query: 470 ttagatctggtttttcattgttatatgcaatggcctcgaaactgagataaagcacgatca 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttagatctggtttttcattgttatatgcaatggcctcgaaactgagataaagcacgatca 599
Query: 530 gagattggatccaactcaccagacgaacggcactctggttgacaaggtctgcatgctgct 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gagattggatccaactcaccagacgaacggcactctggttgacaaggtctgcatgctgct 539
Query: 590 tttccttagacttacgttggtctttcgtagtctccggatcccaggataacctataagaag 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tttccttagacttacgttggtctttcgtagtctccggatcccaggataacctataagaag 479
Query: 650 ctagaggtgggaataagacccgttgagataacatgaatagcgcatgatacccgacggcaa 709
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 478 ctagaggtgggaataagacccgttgagataacaggaatagcgcatgatacccgacggcaa 419
Query: 710 tgtacaacacagtgtgtaaattggatagattcacattcgaagtaatccatccattggatt 769
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 418 tgtacaacacagtgtgtaaattggatagaatcacattcgaagtaatccatccattggatt 359
Query: 770 cgagatatgggatcacgtactcggtcaaatgaaggtgcggagggtaagacattacatang 829
|||||||||||||||||||||||||||||||| |||||||||| | ||||| ||||| |
Sbjct: 358 cgagatatgggatcacgtactcggtcaaatgagggtgcggaggtaaggacatcacatagg 299
Query: 830 tcttgaacagatctttttgttcngaaac 857
|| ||||||||||| | ||||| |||||
Sbjct: 298 tcgtgaacagatctatctgttcggaaac 271
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5625
Number of Sequences: 1807
Number of extensions: 5625
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)