BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZE11RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1488 1544 0.0
>3x_Contig1488
Length = 9807
Score = 1544 bits (779), Expect = 0.0
Identities = 803/811 (99%)
Strand = Plus / Minus
Query: 45 cttgatagcgacacactacgatatggtatcggctccaaagagtacataccggatagatca 104
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 893 cttgatagcgacacactacgagtacttatcggctccaaagagtacataccggatagatca 834
Query: 105 acttttgacaatatgctgaaaggagtcgttttccagtatgacaatgtgaaagacgataac 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 acttttgacaatatgctgaaaggagtcgttttccagtatgacaatgtgaaagacgataac 774
Query: 165 aaagtaccgaaggtcggtccatcgactaaaagcttaatgttgaagtggagtgaacagtat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 aaagtaccgaaggtcggtccatcgactaaaagcttaatgttgaagtggagtgaacagtat 714
Query: 225 tggccgttaatttggagaggaaatcctaatgaccagatattaaacgactatatatttgac 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tggccgttaatttggagaggaaatcctaatgaccagatattaaacgactatatatttgac 654
Query: 285 atgacagagattcggtcattgttaaccaagatagcagaagagtctcgagcaatccgagat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 atgacagagattcggtcattgttaaccaagatagcagaagagtctcgagcaatccgagat 594
Query: 345 tcggatagcatgcaacttccaatagtatcggcattcgttaatccaaaatctggtaaaatt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tcggatagcatgcaacttccaatagtatcggcattcgttaatccaaaatctggtaaaatt 534
Query: 405 ataatatcaaaggattatagacatagtggatctcccctcgatcacagtgttatggtcgga 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ataatatcaaaggattatagacatagtggatctcccctcgatcacagtgttatggtcgga 474
Query: 465 ataaatgaggtagctaaagaagagcaggagagaagagaccgtgtccaaaacggtaccgcg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ataaatgaggtagctaaagaagagcaggagagaagagaccgtgtccaaaacggtaccgcg 414
Query: 525 tcagaaaaagatatacatcaaggggaaacttatctctgcttagattttgacgtatacacc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tcagaaaaagatatacatcaaggggaaacttatctctgcttagattttgacgtatacacc 354
Query: 585 agtcatgagccgtgctcaatgtgcagcatggcactaattcattccagagtgaaaagatgc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agtcatgagccgtgctcaatgtgcagcatggcactaattcattccagagtgaaaagatgc 294
Query: 645 atattcatcaatcctatgtcggtcagcggtgcactgaaacctgattcaggtgatggatac 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 atattcatcaatcctatgtcggtcagcggtgcactgaaacctgattcaggtgatggatac 234
Query: 705 tgcatgcattcaaacaaagatttgaactccaagtatgaagtctttcaatgggttggtgaa 764
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 233 tgcatgcattcaaacaaagatttgaactccaagtatgaagtcttccaatgggttggtgaa 174
Query: 765 gaattggaagtgcctggaatagattctaccgtgtgttcttgagcttttcaactagaaggt 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gaattggaagtgcctggaatagattctaccgtgtgttcttgagcttttcaactagaaggt 114
Query: 825 tggtttgttttcatgtccgttattaattttg 855
||||| |||| ||||||||||||||||||||
Sbjct: 113 tggttggtttccatgtccgttattaattttg 83
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6399
Number of Sequences: 1807
Number of extensions: 6399
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)