BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZE12RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1092 1404 0.0
3x_Contig178 737 0.0
3x_Contig1750 285 8e-77
3x_Contig1797 270 5e-72
>3x_Contig1092
Length = 2520
Score = 1404 bits (708), Expect = 0.0
Identities = 835/871 (95%), Gaps = 5/871 (0%)
Strand = Plus / Plus
Query: 45 cttgtaatagcgttatgttagagttccctgcaagtatgaaatatagtcc-caagtctggt 103
||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||
Sbjct: 230 cttgtaatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggt 289
Query: 104 gcgtactgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatcca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gcgtactgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatcca 349
Query: 164 tcgactcagggagccaatcatcactcggatgtctgctaccccagctgcggccacatttta 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 350 tcgactcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgta 409
Query: 224 tggcatcacctaatgtagtgcttgaatcgattggtatttt-tactgttcagtgcaaaata 282
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 410 tggcatcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaata 469
Query: 283 atgttggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaactt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 atgttggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaactt 529
Query: 343 gttggacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gttggacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttg 589
Query: 403 tgataaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tgataaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgt 649
Query: 463 tgcatctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggact 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tgcatctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggact 709
Query: 523 tagtcaaaactgtatcagttgtagattgagagtgaattgaatatggttacgggatctaat 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tagtcaaaactgtatcagttgtagattgagagtgaattgaatatggttacgggatctaat 769
Query: 583 gagtcacgtgatactacttggacaaaggccacctagccacaactcacttcacaatattct 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gagtcacgtgatactacttggacaaaggccacctagccacaactcacttcacaatattct 829
Query: 643 ataaggatccaattggttgtattgatgttcctgaacgaaattatatatgtaacgggattt 702
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ataaggatccaattggttgtattgatgttcctgaacgaaattatatatgtaacgggattg 889
Query: 703 gtttacgcatagtgaagcaatcaaagctcaagaaatttgagaagtttcccctac-aaata 761
|| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 890 tttcacgcatagtgaagcaatcaaagctcaagaaattgaggaagtttcccctacaaaata 949
Query: 762 taacatttacttattatctagcanaaatttaaaatttcagaatgaatgctaaaaaagagt 821
|||||| |||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct: 950 taacatctacttattatctagcaaaaatataaaatacaagaatgaatgctaaaaaagagt 1009
Query: 822 ctg-cattcaaaatttatttcaacaatcccttgatacatggcttgaactgggaactatta 880
||| |||||||||| || | ||||||||||| | |||||||||||||||| ||||||| |
Sbjct: 1010 ctgtcattcaaaatctagtccaacaatccctcg-tacatggcttgaactgtgaactatga 1068
Query: 881 actgaattttccttttatacggttactatac 911
||||||| ||||||| |||| | ||||||||
Sbjct: 1069 actgaatattcctttcatactgctactatac 1099
>3x_Contig178
Length = 1315
Score = 737 bits (372), Expect = 0.0
Identities = 472/500 (94%), Gaps = 4/500 (0%)
Strand = Plus / Minus
Query: 45 cttgtaatagcgttatgttagagttccctgcaagtatgaaatatagtcc-caagtctggt 103
||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| |||
Sbjct: 860 cttgtaatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggt 801
Query: 104 gcgtactgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatcca 163
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 800 gcgtactgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatcca 741
Query: 164 tcgactcagggagccaatcatcactcggatgtctgctaccccagctgcggccacatttta 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 740 tcgactcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgta 681
Query: 224 tggcatcacctaatgtagtgcttgaatcgattggtatttt-tactgttcagtgcaaaata 282
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 680 tggcatcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaata 621
Query: 283 atgttggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaactt 342
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 620 atgttggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagtt 561
Query: 343 gttggacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttg 402
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gttggacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttg 501
Query: 403 tgataaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgataaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgt 441
Query: 463 tgcatctattg-aacagagataagcagag-gcgtaacgagaaaattaatcttcaatggga 520
||||||||||| |||| | ||||||| || | |||| | ||||||||||||||||| |
Sbjct: 440 tgcatctattgcaacacacataagcacagcacctaaccacaaaattaatcttcaatgcca 381
Query: 521 cttagtcaaaactgtatcag 540
||||||||||||||||||||
Sbjct: 380 cttagtcaaaactgtatcag 361
>3x_Contig1750
Length = 14427
Score = 285 bits (144), Expect = 8e-77
Identities = 247/279 (88%), Gaps = 2/279 (0%)
Strand = Plus / Plus
Query: 540 gttgtagattgagagtgaattgaatatggttacgggatctaatgagtcacgtgatactac 599
|||||| |||||||||||||||| |||||| ||||||| ||||| |||||||||||||||
Sbjct: 13515 gttgtaaattgagagtgaattgattatggtcacgggatttaatgggtcacgtgatactac 13574
Query: 600 ttggacaaaggccacctagccacaactcacttcacaatattctataaggatccaattggt 659
||| | ||||||| | |||||||||||||||||| ||||||||| || | ||||||||||
Sbjct: 13575 ttgaataaaggccgcatagccacaactcacttcagaatattctagaatgctccaattggt 13634
Query: 660 tgtattgatgttcctgaacgaaattatatatgtaacgggatttgtttacgcatagtgaag 719
|||||||||||| ||||||||||||||||| ||| ||||||| || |||||||||||||
Sbjct: 13635 tgtattgatgttgctgaacgaaattatataagtagcgggattgtttcacgcatagtgaag 13694
Query: 720 caatcaaagctcaagaaatttgagaagttt-cccctac-aaatataacatttacttatta 777
|||||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||
Sbjct: 13695 caatcaaagctcaagaaattgaggaagtttacccctacaaaatataacatctacttatta 13754
Query: 778 tctagcanaaatttaaaatttcagaatgaatgctaaaaa 816
|||| || |||| |||||| ||||||||| |||||||
Sbjct: 13755 tctaacaaaaatataaaatacaagaatgaatactaaaaa 13793
>3x_Contig1797
Length = 34782
Score = 270 bits (136), Expect = 5e-72
Identities = 262/299 (87%), Gaps = 4/299 (1%)
Strand = Plus / Minus
Query: 540 gttgtagattgagagtgaattgaatatggttacgggatctaatgagtcacgtgatactac 599
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct: 32556 gttgtaaattgagagtgaattgaatacggtcacgggatctaatgagtcacgtgatgctac 32497
Query: 600 ttggacaaaggccacctagccacaactcacttcacaatattctataaggatccaattggt 659
||| | ||||||||| |||||||| ||||||||| ||||||||| || | ||||||||||
Sbjct: 32496 ttgaataaaggccacgtagccacagctcacttcagaatattctagaatgctccaattggt 32437
Query: 660 tgtattgatgttcctgaacgaaattatatatgtaacgggatttgtttacgcatagtgaag 719
|||||||||||| |||||||||| |||||| ||||||||||| || ||| |||||||||
Sbjct: 32436 tgtattgatgttactgaacgaaactatataagtaacgggattgtttcacgaatagtgaag 32377
Query: 720 caatcaaagctc-aagaaatttgagaagttt-cccctac-aaatataacatttacttatt 776
|||||||||||| |||||||| ||||||| || ||| ||||||||||| ||||||||
Sbjct: 32376 caatcaaagctcaaagaaattgaggaagtttacctgtacaaaatataacatctacttatt 32317
Query: 777 atctagcanaaatttaaaatttcagaatgaatgctaaaaaagagtct-gcattcaaaat 834
||||| || |||| |||||| ||||||||| |||||||||| ||| |||||||||||
Sbjct: 32316 atctaacaaaaatataaaatacaagaatgaatactaaaaaagaatctggcattcaaaat 32258
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7718
Number of Sequences: 1807
Number of extensions: 7718
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 4
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)